PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G177700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 375aa    MW: 39090.2 Da    PI: 7.1811
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G177700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_175.66.5e-24255317163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         e+e+krerrkq+NRe+ArrsR+RK++e+eeL +kv+eL++eN aL+ el++lkk ++ +++++
  Brast06G177700.1.p 255 EREIKRERRKQSNRESARRSRLRKQQECEELSRKVAELTTENNALRTELDQLKKACEDMEAQN 317
                         89*********************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF165963.9E-7121228No hitNo description
Gene3DG3DSA:1.20.5.1708.8E-18254316No hitNo description
PfamPF001702.3E-21255317IPR004827Basic-leucine zipper domain
SMARTSM003388.5E-22255319IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.461257320IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.11E-11258313No hitNo description
CDDcd147022.02E-21260310No hitNo description
PROSITE patternPS000360262277IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MASSSDEQPK PPEPPAAAVA TATAVPQTHA EWAASVQAFY AAAGHPYAAW PAQHLMAAAA  60
SGAPYGAPVP FPMYHPGAAM AYYAQASMAA GVPYPTAEAV AAAPAVAEGK GKGKGGGVSP  120
EKGSSAAPSG DDGSRSCDSG SDESSDTRDY DTDHKDSSAA KKRKSGNTSA EGEPSQTAVV  180
TYAAGESPYQ LKARSASKLP VSAPGRAALP NATPNLNIGI DLWSASQPVA VLPGQGEASP  240
GLALARCDGV GQLDEREIKR ERRKQSNRES ARRSRLRKQQ ECEELSRKVA ELTTENNALR  300
TELDQLKKAC EDMEAQNTRL MSQEPATVTT TLGMSIEAPK VQQHEDEGKL HKKANNNSNG  360
KYVGGSRKPE ANPR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1271277RRSRLRK
2271278RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtInteracts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G177700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankWHTHBP1ALZ0.0D64051.1 Triticum aestivum mRNA for HALF-1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003557390.10.0DNA-binding protein EMBP-1 isoform X1
SwissprotP250324e-61EMBP1_WHEAT; DNA-binding protein EMBP-1
TrEMBLA0A3B6AXN10.0A0A3B6AXN1_WHEAT; Uncharacterized protein
TrEMBLA0A3B6AY420.0A0A3B6AY42_WHEAT; Uncharacterized protein
TrEMBLA0A446KY930.0A0A446KY93_TRITD; Uncharacterized protein
TrEMBLA0A446KY940.0A0A446KY94_TRITD; Uncharacterized protein
STRINGBRADI1G54180.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21603692
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-26basic region/leucine zipper transcription factor 16