PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G171200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 416aa    MW: 45808.2 Da    PI: 6.9074
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G171200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.8e-17109158155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Brast06G171200.1.p 109 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 158
                         78*******************......55************************998 PP
2AP243.58e-14201251155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV+ +k  grW+A+       g    +k+++lg f+++ eAa+a+++a+++++g
  Brast06G171200.1.p 201 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEIEAARAYDRAALRFNG 251
                         89********.7******...5...334336**********99***********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-16109167IPR016177DNA-binding domain
PfamPF008471.8E-9109158IPR001471AP2/ERF domain
CDDcd000183.84E-11110165No hitNo description
SMARTSM003802.1E-31110172IPR001471AP2/ERF domain
PROSITE profilePS5103217.728110166IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-17110166IPR001471AP2/ERF domain
PfamPF008472.0E-9201251IPR001471AP2/ERF domain
CDDcd000182.45E-26201259No hitNo description
SuperFamilySSF541718.5E-17201259IPR016177DNA-binding domain
SMARTSM003801.8E-31202265IPR001471AP2/ERF domain
PROSITE profilePS5103216.291202259IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-16202259IPR001471AP2/ERF domain
PRINTSPR003671.4E-6203214IPR001471AP2/ERF domain
PRINTSPR003671.4E-6241261IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MVLDLNAESP DGSATSSSST PDSGGFRFDL LGGSLEDDGC LLPVMTHQLF PSPDAGFHAA  60
AAVAVSDDSP PLLTDSVPRR PADLGVAQKV APGGAGGKKS RRGPRSRSSQ YRGVTFYRRT  120
GRWESHIWDC GKQVYLGGFD TAHAAARAYD RAAIKFRGLE ADINFSLNDY EEDLKQMKNW  180
TKEEFVHILR RQSTGFARGN SKYRGVTLHK CGRWEARMGQ LLGKKYIYLG LFDSEIEAAR  240
AYDRAALRFN GREAVTNFDS TSYDRDVLPE TENEAVVDED IIDLNLRISQ PKVHDFKSDD  300
ILTGFELNCD SPQVRRSFVS QPVNPQWLIH SQASIPPQDQ HLYASPCLGI VVNVKEVPVE  360
KRSDLGPQSF PAWSWQMQGS RSPVPLLATA ASSGFSTATQ PHPFAGHRLY FPPTA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G171200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228211.10.0floral homeotic protein APETALA 2 isoform X2
SwissprotQ8H4430.0AP23_ORYSJ; APETALA2-like protein 3
TrEMBLI1H2I30.0I1H2I3_BRADI; Uncharacterized protein
STRINGBRADI1G53650.40.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24483890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.36e-92related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]