PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G167400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 319aa    MW: 34972 Da    PI: 10.5562
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G167400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.42e-14125179153
                 AP2   1 sgykGVrwdkkrgr...WvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                         s+y+GVr+++  g    W AeIrdps  g r+r +lg+++t+eeA++a+ +ar ++
  Brast06G167400.1.p 125 SQYRGVRRRS-YGDgdhWSAEIRDPSLPGPRRRKWLGTYDTPEEAYAAYTKARISI 179
                         78*****988.5777**********884436*********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.20E-13125189No hitNo description
PfamPF008471.8E-6125180IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-11125185IPR016177DNA-binding domain
PROSITE profilePS5103217.359126189IPR001471AP2/ERF domain
SMARTSM003803.9E-10126195IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-15126189IPR001471AP2/ERF domain
PRINTSPR003676.2E-5127138IPR001471AP2/ERF domain
PRINTSPR003676.2E-5155171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MAALGAGAEI YAVAAEGKGK KVAADQGERR KRKWGNKKQQ LVEHPRYGNV RIFQGGRDAD  60
ATDSSSDEAE REACRARQEP LPPKLLGTVR QLLRPPVPDP EKEKEKQEVL SPAPAAKRVK  120
RNKSSQYRGV RRRSYGDGDH WSAEIRDPSL PGPRRRKWLG TYDTPEEAYA AYTKARISID  180
ASKAARRFAL LHTPQPAPPA AVAPPPKPVP LPPPALAVPI NFVEQAPEAE GSPLPAVPEK  240
LSEQQEENAV LFPLPVVPEK LVPRRRGMGR KKNRSEQDDA TAVLAPLSAP ARPEKLVPRR  300
RYGPPMKLDE AGCVVTRV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152156PRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G167400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0Q3S5A32e-79A0A0Q3S5A3_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3715823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.19e-12ethylene-responsive element binding factor 13