PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G120700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 811aa    MW: 92720.3 Da    PI: 6.4767
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G120700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.18e-2057143190
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                         +fY +Y+ + GF ++++++++   +g  +++tf Csk g+++ ++    ++  ++  t+tgCkak+ vk  + +++wev+ le+eHnH+l 
  Brast06G120700.1.p  57 QFYVAYGCHSGFGITRRSNNTF--DGFRYRSTFICSKGGQSRLRSGV--TRPARKRGTKTGCKAKMIVKDAHfQNRWEVIVLESEHNHPLD 143
                         6****************99988..9999**************99877..77788889***************9****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-1757144IPR004330FAR1 DNA binding domain
PfamPF105511.9E-20260353IPR018289MULE transposase domain
PfamPF044341.2E-6542574IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.458542578IPR007527Zinc finger, SWIM-type
SMARTSM005756.6E-4553580IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 811 aa     Download sequence    Send to blast
MEEEDYITES SNEEDVQEDG EKDISITEGD VFKPVDIESE FVPKVGMVFD SEEDAFQFYV  60
AYGCHSGFGI TRRSNNTFDG FRYRSTFICS KGGQSRLRSG VTRPARKRGT KTGCKAKMIV  120
KDAHFQNRWE VIVLESEHNH PLDPSLLKYK KHLKDSPFSL KPPRLCETPQ SSSGALHSSR  180
DGDGGIPSCA QIEFKSKVDR NRKLKLAEGD LEALLSFFND MQDRNPCFFY SLDMNEQGQL  240
RNVFWADAKS RSSYNYFGDV VAINATNFSD QYDIQFVSFV GNNHHAHPVL LGCGLLASRS  300
LGAYVWLFDT WLRCMNGIPP PSIITNHCHD VAIAVKKVFH NARHRFCLWH ILNELPEKLD  360
GMGRKDEMIS TFSALAYDSV TMPDFDKKWQ EMTQQFHLEG NEWLSNLYEV RMQWAPVYVK  420
DFFWAGLSII DRSDSATDYF DGWLMSGTSV KMFVEQYEAT VRSKLEKESH DDLQSSQLRP  480
QMMTGLPVEE QAAKMYTIEI FQMFLNEIGH SFHCNYNILD RSDSGVTYIV SEHVNRAKKV  540
DYKVAYNNGE DDIWCLCRLF QSKGILCRHA LTVLRQELVL MIPPKYIIRR WCKDYKQTCV  600
LTSQPVSVST QELGSYDDLY KSSHQYFAEV VELGSVNLES KEYALSIMRE VRDKVISYEK  660
SLRDQRVDSH VSTANFAYNP VNEDFTDDAL PISLGTKGWD LMQGQSKRSR KKKLATPTVL  720
DTLKKKTKRA YNKRRNATAN NLNTAITTTD NVTNNTNVQQ NQVNEGWSLT STGAPETFPY  780
GVENISFDLS QYNNAPSFHW PESSSRSQLQ *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G120700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563072.10.0protein FAR1-RELATED SEQUENCE 6
TrEMBLI1GU800.0I1GU80_BRADI; Uncharacterized protein
STRINGBRADI1G26960.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-111FAR1-related sequence 6