PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast06G072600.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | HRT-like | ||||||||
Protein Properties | Length: 585aa MW: 64007.8 Da PI: 10.3285 | ||||||||
Description | HRT-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HRT-like | 56.9 | 3.6e-18 | 344 | 374 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGv ledGs C ++Pv+gRKRCe HKG+R+ Brast06G072600.2.p 344 VCGVVLEDGSSCLEHPVEGRKRCELHKGRRV 374 7*****************************7 PP | |||||||
2 | HRT-like | 24.6 | 4.3e-08 | 501 | 528 | 1 | 29 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGm 29 +CG+ +++G C+ Pv g K CeeHKG Brast06G072600.2.p 501 MCGIVTDNG-YCRLVPVAGSKSCEEHKGI 528 6*******9.6*****************5 PP | |||||||
3 | HRT-like | 51.4 | 1.9e-16 | 547 | 576 | 1 | 30 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 iCG++ +dGs+Ck+qP gRKRC +HKG+R Brast06G072600.2.p 547 ICGARASDGSPCKNQPSAGRKRCTQHKGQR 576 8****************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00465 | 7.4E-5 | 111 | 217 | IPR000305 | GIY-YIG nuclease superfamily |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000033 | Biological Process | regulation of seed dormancy process | ||||
GO:0097100 | Molecular Function | supercoiled DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 585 aa Download sequence Send to blast |
MRQPSPNKPR FSKRDKPAPA ARRGGGAEPV CRYEGSGRAM PVAPAPAARL KREDCPRTKH 60 DSLFSPWKVL VGPSDWEDHA AGKEGVRRYH TVNLPDNYPG LYELGVARPS SEGVRARRNL 120 LGGVVVVYLG QADNIRARLQ QYGRTGSHLD TGNPSAAVCK AEMNMLEAGP GLFREVFSRG 180 YSVVFRCALM GNKKEAEKTE GQLLRVFDYA WNKLQNGACR REEILLKLEL GSHRSSLLSR 240 VRHLKQKMFG QKAGIKISSS ASVDMSSDTM KYMIPRIRTF VGFRPRIVNS ADNSGNMIDI 300 HQKCTPESNT PGNKQAHRRS GGYKVKKIDV IKHRTARVRE FNSVCGVVLE DGSSCLEHPV 360 EGRKRCELHK GRRVSRKVSS SSYSCQVGIP TVESVPRLSE NPSKSDQAWQ TSLDQSKTLS 420 IIAKESSRQM DIFEAKEVKT GEAPIEDVTS GISDAESQSK EDQPSGRIWF ELLKAQKLAS 480 RAPPSRGQGS KARVADDMAA MCGIVTDNGY CRLVPVAGSK SCEEHKGIQI TGAPFVPSPG 540 RSGWPSICGA RASDGSPCKN QPSAGRKRCT QHKGQRAAST PLIE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast06G072600.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003562794.1 | 0.0 | protein EFFECTOR OF TRANSCRIPTION 2 | ||||
TrEMBL | I1GSW2 | 0.0 | I1GSW2_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G23090.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56780.1 | 1e-53 | effector of transcription2 |
Link Out ? help Back to Top | |
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Phytozome | Brast06G072600.2.p |