PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G072600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HRT-like
Protein Properties Length: 585aa    MW: 64007.8 Da    PI: 10.3285
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G072600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like56.93.6e-18344374131
            HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                         +CGv ledGs C ++Pv+gRKRCe HKG+R+
  Brast06G072600.1.p 344 VCGVVLEDGSSCLEHPVEGRKRCELHKGRRV 374
                         7*****************************7 PP
2HRT-like24.64.3e-08501528129
            HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGm 29 
                         +CG+ +++G  C+  Pv g K CeeHKG 
  Brast06G072600.1.p 501 MCGIVTDNG-YCRLVPVAGSKSCEEHKGI 528
                         6*******9.6*****************5 PP
3HRT-like51.41.9e-16547576130
            HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                         iCG++ +dGs+Ck+qP  gRKRC +HKG+R
  Brast06G072600.1.p 547 ICGARASDGSPCKNQPSAGRKRCTQHKGQR 576
                         8****************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004657.4E-5111217IPR000305GIY-YIG nuclease superfamily
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MRQPSPNKPR FSKRDKPAPA ARRGGGAEPV CRYEGSGRAM PVAPAPAARL KREDCPRTKH  60
DSLFSPWKVL VGPSDWEDHA AGKEGVRRYH TVNLPDNYPG LYELGVARPS SEGVRARRNL  120
LGGVVVVYLG QADNIRARLQ QYGRTGSHLD TGNPSAAVCK AEMNMLEAGP GLFREVFSRG  180
YSVVFRCALM GNKKEAEKTE GQLLRVFDYA WNKLQNGACR REEILLKLEL GSHRSSLLSR  240
VRHLKQKMFG QKAGIKISSS ASVDMSSDTM KYMIPRIRTF VGFRPRIVNS ADNSGNMIDI  300
HQKCTPESNT PGNKQAHRRS GGYKVKKIDV IKHRTARVRE FNSVCGVVLE DGSSCLEHPV  360
EGRKRCELHK GRRVSRKVSS SSYSCQVGIP TVESVPRLSE NPSKSDQAWQ TSLDQSKTLS  420
IIAKESSRQM DIFEAKEVKT GEAPIEDVTS GISDAESQSK EDQPSGRIWF ELLKAQKLAS  480
RAPPSRGQGS KARVADDMAA MCGIVTDNGY CRLVPVAGSK SCEEHKGIQI TGAPFVPSPG  540
RSGWPSICGA RASDGSPCKN QPSAGRKRCT QHKGQRAAST PLIE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G072600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562794.10.0protein EFFECTOR OF TRANSCRIPTION 2
TrEMBLI1GSW20.0I1GSW2_BRADI; Uncharacterized protein
STRINGBRADI1G23090.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79483443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.11e-53effector of transcription2