PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G070800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 316aa    MW: 33940.6 Da    PI: 4.9559
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G070800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.9e-112392791055
                         HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r+RR+riN+++  L+ l+P+      +K++ +++Le+AveY+k +q
  Brast06G070800.1.p 239 RKRRERINERLKVLQNLVPNG-----TKVDISTMLEEAVEYVKFMQ 279
                         9******************97.....8****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.002229278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.85E-14233293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-13234289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.0E-12235284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.43E-12238283No hitNo description
PfamPF000103.8E-8239279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MESSYSSASA VPMEADDAMA QFFGLGAEAH GGHGCFAYEQ QDESMEAMAA MLFMPGLDTD  60
SNSSSSCLNY DAPPHPQCWP QPQTQPGHAH SSSVTSFLDP AAHGYEGFEF PVMEMGDDPF  120
QHAHFEPHCA TIPFLREEFL GNHSSGAAGG EDHAPVNNKR KSSSAAMPAS KKAKKAGKKG  180
LTGNENDEGG DAYIVDPQSS SSCTSEDGDV DGNAKSSSKK TGTRAIRGAA TDPQSLYARK  240
RRERINERLK VLQNLVPNGT KVDISTMLEE AVEYVKFMQL QIKLLSSDDT WMYAPLAYNG  300
INVGSFDLNI AALRK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G070800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229624.30.0transcription factor HEC2
TrEMBLA0A0Q3GY710.0A0A0Q3GY71_BRADI; Uncharacterized protein
STRINGBRADI1G22960.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124962935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.16e-50bHLH family protein