PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G057900.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NF-YA
Protein Properties Length: 295aa    MW: 31877.3 Da    PI: 9.9278
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G057900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.12.6e-32146202158
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         +ep++VNaKQy++Il+RRq Rakle+++kl  k+rkpylheSRh+hA++R+RgsgGrF
  Brast06G057900.2.p 146 EEPMFVNAKQYHAILRRRQIRAKLEAQNKL-VKGRKPYLHESRHRHAMKRARGSGGRF 202
                         69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.7E-37144205IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.933145205IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.7E-27147202IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.4E-24148170IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860150170IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.4E-24179202IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009785Biological Processblue light signaling pathway
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MEDHPGHPIS NYDFLSGNGC HTKKLGHEKG SSSTKSGRSQ QEASAMSDSS LNEQHTSRSS  60
AQSDNDDGHG KHDQVMMKSL LSLGNREAGS SARKVDYSQS FACIPYNADA YYGSVLTGYA  120
SHAIVHAELN GTTNSRVPLS AESTAEEPMF VNAKQYHAIL RRRQIRAKLE AQNKLVKGRK  180
PYLHESRHRH AMKRARGSGG RFLNTKQLEE QKQMQASTGG KNTFLQSSPT FAPSASAPSN  240
MSSVSTSGRM LANHQEHACF PSTGFHPMAS FGARSGGDAE LAVNGMQQRA SMMS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-23146207263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186195RHRHAMKRAR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G057900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235752.10.0nuclear transcription factor Y subunit A-4
TrEMBLA0A0Q3JTC40.0A0A0Q3JTC4_BRADI; Uncharacterized protein
STRINGTraes_2BS_A95B28510.11e-152(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.11e-39nuclear factor Y, subunit A5