PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G039700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GeBP
Protein Properties Length: 373aa    MW: 40525.4 Da    PI: 5.4794
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G039700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573112.23.3e-3575173297
              DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkif 89 
                         lfqrlw+eeDeiv+L+G+ +f+a +g+   +++ d+d fye +++++++++sksqlveK+rrLK+K++++v++ +sg  +sf+++h+q if
  Brast06G039700.1.p  75 LFQRLWTEEDEIVILRGFAEFTAARGTafASHQyDTDPFYEDMRRRLQLDFSKSQLVEKLRRLKRKYRNCVSRLRSGGTFSFRSPHEQAIF 165
                         79************************99877778********************************************************* PP

              DUF573  90 elskkiWg 97 
                         e+++ iW+
  Brast06G039700.1.p 166 EIARTIWH 173
                         *******7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045048.3E-3276173IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MLPAGDGPSA AVAAISFPDA DADDYSEDGD FTDAQFLEPP DPGLLDPTSS SATALLPTAG  60
SAGGSGGGGG ERRPLFQRLW TEEDEIVILR GFAEFTAARG TAFASHQYDT DPFYEDMRRR  120
LQLDFSKSQL VEKLRRLKRK YRNCVSRLRS GGTFSFRSPH EQAIFEIART IWHHTTNKHG  180
RDPSADSDDE EAAVAAAAAV AATAVPANNT SPNGEVKSPS GRQRRRRRSS ESATPTTPAA  240
TILVQPPQPV QVPVKMDGSL PALPQTPMPV TVTMEGSEHH RFPVTSPQSG VFDAEKNCLM  300
PLFKEMIHAV INIGSNPFGA KLPEPPLGLP MDGERWRNQR ILELEVYLKR IELLQEQVKE  360
TLEELKSSAP GT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G039700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755634.10.0probable transcription factor At5g28040
TrEMBLA0A0Q3ND730.0A0A0Q3ND73_BRADI; Uncharacterized protein
STRINGBRADI1G20210.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.23e-36DNA-binding storekeeper protein-related transcriptional regulator