PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast06G033500.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bZIP

Protein Properties

Length: 614aa MW: 65647.7 Da PI: 7.4361

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast06G033500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	43	9.6e-14	157	218	2	63
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +e kr r+ +NRe+A sRqRKk+++eeLe kvk+++a +L +++ + e a lk+++ Brast06G033500.1.p 157 EEAKRRARLVRNRESAHMSRQRKKQYVEELEGKVKAMQATIADLSARISCATAENAVLKQQL 218 799**********************************************9999999999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.7E-12	155	220	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.2E-12	157	218	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.967	158	221	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.0E-16	160	219	No hit	No description
SuperFamily	SSF57959	1.53E-12	160	218	No hit	No description
CDD	cd14704	5.41E-19	161	212	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 614 aa Download sequence Send to blast
MTAKTNPLFP LQTLHASATV IRKPQPPPLY ALAMTGSAAH MAEPCLFADM PSFLDDLPEF 60 PHPVDDDNFA LEDFDLDDLD IDFDLDLFPT DDAQLSPPPP PLASSSSSAG SPGGGSSSSG 120 GGVDGGGGGL KNDESSESSS RIADAGSDGK PRDGEDEEAK RRARLVRNRE SAHMSRQRKK 180 QYVEELEGKV KAMQATIADL SARISCATAE NAVLKQQLSG AAGAGAPPPL LPMYPGLYPL 240 PPPWLHPAYA MRGSQVPLVP IPRLKTRKPA PAEVEPPAKK TRKTKKVASV SLLGLLFLVM 300 VCGCLVPAVN RMYGAVDSGE GIVLAPSHHG RVLAVEGPRN AVPDGIDSKL PQNSSETLPA 360 LLYLPRNGKH VKINGNLVIK SIVASEKASS RMSRYDQKIS GNPGNQETSL AIPGHVAKLD 420 SEEVPKAAQG IKNKLMALPP GDRRIYREDD ELLPQWFSEA MSGPMLSSGM CTEVFQFDIS 480 TTSADANGIV PVYSSAMPNS SHNLTENLPS ARPQKIKNRR ILHSVPIPLQ GSTANHTDRL 540 KERLKEHPKN ESFAGNKPAS SVVVSVLADP REDGEGRISS KSLSRIFVVV LVDSVKYVTY 600 SCVLPFKNHS PHL*

Sequence ? help Back to Top

Protein Sequence Length: 614 aa Download sequence Send to blast

MTAKTNPLFP LQTLHASATV IRKPQPPPLY ALAMTGSAAH MAEPCLFADM PSFLDDLPEF  60
PHPVDDDNFA LEDFDLDDLD IDFDLDLFPT DDAQLSPPPP PLASSSSSAG SPGGGSSSSG  120
GGVDGGGGGL KNDESSESSS RIADAGSDGK PRDGEDEEAK RRARLVRNRE SAHMSRQRKK  180
QYVEELEGKV KAMQATIADL SARISCATAE NAVLKQQLSG AAGAGAPPPL LPMYPGLYPL  240
PPPWLHPAYA MRGSQVPLVP IPRLKTRKPA PAEVEPPAKK TRKTKKVASV SLLGLLFLVM  300
VCGCLVPAVN RMYGAVDSGE GIVLAPSHHG RVLAVEGPRN AVPDGIDSKL PQNSSETLPA  360
LLYLPRNGKH VKINGNLVIK SIVASEKASS RMSRYDQKIS GNPGNQETSL AIPGHVAKLD  420
SEEVPKAAQG IKNKLMALPP GDRRIYREDD ELLPQWFSEA MSGPMLSSGM CTEVFQFDIS  480
TTSADANGIV PVYSSAMPNS SHNLTENLPS ARPQKIKNRR ILHSVPIPLQ GSTANHTDRL  540
KERLKEHPKN ESFAGNKPAS SVVVSVLADP REDGEGRISS KSLSRIFVVV LVDSVKYVTY  600
SCVLPFKNHS PHL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in endoplasmic reticulum (ER) stress response. Acts as ER stress sensor and activates the transcription factor BZIP50 and the chaperone BIP1. {ECO:0000269\|PubMed:22050533}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast06G033500.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By dithiothreitol- and tunicamycin-induced endoplasmic reticulum (ER) stress response. {ECO:0000305\|PubMed:22050533}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003562569.1	0.0	bZIP transcription factor 60
Swissprot	Q8LIB3	0.0	BZP60_ORYSJ; bZIP transcription factor 60
TrEMBL	I1GRS7	0.0	I1GRS7_BRADI; Uncharacterized protein
STRING	BRADI1G19702.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11179	30	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40950.1	2e-82	bZIP family protein

Link Out ? help Back to Top
Phytozome	Brast06G033500.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Oono Y, et al. Analysis of ER stress in developing rice endosperm accumulating beta-amyloid peptide. Plant Biotechnol. J., 2010. 8(6): p. 691-718 [PMID:20331531] Hu J, et al. The Bphi008a gene interacts with the ethylene pathway and transcriptionally regulates MAPK genes in the response of rice to brown planthopper feeding. Plant Physiol., 2011. 156(2): p. 856-72 [PMID:21487048] Takahashi H,Kawakatsu T,Wakasa Y,Hayashi S,Takaiwa F A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response. Plant Cell Physiol., 2012. 53(1): p. 144-53 [PMID:22084314] Ohta M, et al. Analysis of rice ER-resident J-proteins reveals diversity and functional differentiation of the ER-resident Hsp70 system in plants. J. Exp. Bot., 2013. 64(18): p. 5429-41 [PMID:24153418] Cheng Q, et al. An alternatively spliced heat shock transcription factor, OsHSFA2dI, functions in the heat stress-induced unfolded protein response in rice. Plant Biol (Stuttg), 2015. 17(2): p. 419-29 [PMID:25255693]