PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast06G011100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 319aa    MW: 33551.3 Da    PI: 8.2155
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast06G011100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY77.51.6e-24119179259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dg +WrKYGqK +++s++prsYYrCt++   gC+++k+v++s+++p+ ++i Y geH+++
  Brast06G011100.1.p 119 NDGQSWRKYGQKYIHKSTNPRSYYRCTHKhdqGCKATKQVQKSESNPSEFIISYFGEHTCK 179
                         8***************************99999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-25104179IPR003657WRKY domain
SuperFamilySSF1182905.49E-24112179IPR003657WRKY domain
PROSITE profilePS5081121.528113176IPR003657WRKY domain
SMARTSM007745.7E-34118180IPR003657WRKY domain
PfamPF031065.3E-23119179IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MTSQDGGRST EPPLPQQAAL YDDLVVVRER AVMLQTVLQG SPIGDAGELM QGMMTGLSSA  60
FSRLGTNGGG AVAASGAGRR PGGRRTRAGA AAGPVRRSSG SRRRSKSPFI KTDTVTTLND  120
GQSWRKYGQK YIHKSTNPRS YYRCTHKHDQ GCKATKQVQK SESNPSEFII SYFGEHTCKD  180
LSTLHLEGAA APPDHCANLI NFSSINNGTA ATANTSAFPH PLVFSSFNYS SLPAQELPAF  240
CEKLIQAAAD QVAIEEGRRM AAAVPLTVGS APAEYWPAPG EMDAAGAGIS SFPSSPSSLG  300
FTGSFGSFGD DDLFGFDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-24115179569OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast06G011100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559789.11e-170probable WRKY transcription factor 29
TrEMBLI1GR431e-169I1GR43_BRADI; Uncharacterized protein
STRINGBRADI1G17660.11e-170(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125272837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.13e-24WRKY DNA-binding protein 46