PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast05G300000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | Dof | ||||||||
Protein Properties | Length: 262aa MW: 28111.6 Da PI: 6.7642 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 107.4 | 7.4e-34 | 47 | 101 | 7 | 61 |
zf-Dof 7 kcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +cprC+s +tkfCyynnyslsqPry C++CrryWt+GG+lr+vPvGgg+r+++k+ Brast05G300000.1.p 47 ECPRCHSGDTKFCYYNNYSLSQPRYHCRGCRRYWTQGGSLRDVPVGGGCRNRNKQ 101 8*************************************************87765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 6.0E-21 | 36 | 100 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 26.925 | 46 | 100 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 5.4E-30 | 47 | 100 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 48 | 84 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MYHLFLGFLV LLLPLRACAG FASHEMEEVG MAMNGARQTT AARLRPECPR CHSGDTKFCY 60 YNNYSLSQPR YHCRGCRRYW TQGGSLRDVP VGGGCRNRNK QQQRSAASSS SSSSAMVNLI 120 PDMLPAFVPP PGWGSDLVLP PPAAAPSSFL DILRSGGGLL PIDAAMPLPA MASFGTGMQQ 180 HAMGDTTMVG LEWQPQLTGG INGGAGSSGV AQQHLGNNMT DDINGGQGSS RDDYYWYWID 240 DDNNGGPWQS LINNNNTSSL M* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast05G300000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB028131 | 8e-34 | AB028131.2 Oryza sativa Japonica Group mRNA for Dof zinc finger protein, complete cds, clone: OsDof-10. | |||
GenBank | AK107294 | 8e-34 | AK107294.1 Oryza sativa Japonica Group cDNA clone:002-126-C02, full insert sequence. | |||
GenBank | AP005510 | 8e-34 | AP005510.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0009N02. | |||
GenBank | AP014958 | 8e-34 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 8e-34 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024310444.1 | 3e-97 | dof zinc finger protein DOF1.6-like | ||||
TrEMBL | A0A2K2CUC1 | 1e-103 | A0A2K2CUC1_BRADI; Uncharacterized protein (Fragment) | ||||
STRING | Traes_5BL_44A8BCF95.1 | 3e-33 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21340.1 | 8e-30 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast05G300000.1.p |