PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast05G265600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 254aa MW: 27582.8 Da PI: 9.0081 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 124.1 | 1.2e-38 | 20 | 156 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpk...kvka...eekewyfFskrdkkya.tgkrknratksg 81 ++pGfrF Pt+eel+ +yL++++++ +l++vi+ vd+y ++P+ Lp+ + a + ++w+fF++r+ + + +g r+ r+t sg Brast05G265600.1.p 20 MAPGFRFYPTEEELLGFYLRHRLAAAAatrPPLHRVIPVVDVYAHHPSALPSmagE--AsvrDAEQWFFFCPRAPERElRGGRPARTTPSG 108 579*******************98887666788889***************53442..13335669******98776648*********** PP NAM 82 yWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127 yWkatg+ v+s+ ++el+g+k+t+vfy+grap+g kt+W m+ey+ Brast05G265600.1.p 109 YWKATGSPSYVFSSssSSELIGVKRTMVFYNGRAPTGAKTRWKMNEYK 156 ************98777888***************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.45E-42 | 19 | 185 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 45.595 | 20 | 186 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-22 | 22 | 156 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MATRTSSGRG EEEEEAASAM APGFRFYPTE EELLGFYLRH RLAAAAATRP PLHRVIPVVD 60 VYAHHPSALP SMAGEASVRD AEQWFFFCPR APERELRGGR PARTTPSGYW KATGSPSYVF 120 SSSSSSELIG VKRTMVFYNG RAPTGAKTRW KMNEYKALAH GGPSLQPTTA PPKLRNEFSV 180 CRVYVSTGTL RSFDRRPLNA AGHAQAQAAA YRHQSAPSAA AALDTNLAEN TRDFSSSMIA 240 AAASDDLDFD MDF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-27 | 8 | 184 | 5 | 163 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-27 | 8 | 184 | 5 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-27 | 8 | 184 | 5 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-27 | 8 | 184 | 5 | 163 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-27 | 8 | 184 | 8 | 166 | NAC domain-containing protein 19 |
3swm_B | 3e-27 | 8 | 184 | 8 | 166 | NAC domain-containing protein 19 |
3swm_C | 3e-27 | 8 | 184 | 8 | 166 | NAC domain-containing protein 19 |
3swm_D | 3e-27 | 8 | 184 | 8 | 166 | NAC domain-containing protein 19 |
3swp_A | 3e-27 | 8 | 184 | 8 | 166 | NAC domain-containing protein 19 |
3swp_B | 3e-27 | 8 | 184 | 8 | 166 | NAC domain-containing protein 19 |
3swp_C | 3e-27 | 8 | 184 | 8 | 166 | NAC domain-containing protein 19 |
3swp_D | 3e-27 | 8 | 184 | 8 | 166 | NAC domain-containing protein 19 |
4dul_A | 3e-27 | 8 | 184 | 5 | 163 | NAC domain-containing protein 19 |
4dul_B | 3e-27 | 8 | 184 | 5 | 163 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast05G265600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003577031.1 | 1e-137 | NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 2e-67 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A0Q3HFE8 | 1e-135 | A0A0Q3HFE8_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G42180.1 | 1e-128 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 2e-56 | NAC domain containing protein 90 |
Link Out ? help Back to Top | |
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Phytozome | Brast05G265600.1.p |
Publications ? help Back to Top | |||
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