PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G228600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 542aa    MW: 59062 Da    PI: 6.4625
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G228600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.94.1e-09100123326
                         S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                         ++ C ++ ++GtC++G +CkF+H+
  Brast05G228600.1.p 100 EPDCTYYIKFGTCRFGMKCKFNHP 123
                         689********************8 PP
2zf-CCCH26.89e-09240263326
                         S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                         +e+C+++  +G Ck+G +C++ H+
  Brast05G228600.1.p 240 QEECKYYKMFGGCKFGKSCRYLHP 263
                         699********************8 PP
3zf-CCCH322.2e-10289311426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                         ++C++++rtG Cky  +C+F+H+
  Brast05G228600.1.p 289 KECQYYMRTGSCKYATNCRFHHP 311
                         79********************9 PP
4zf-CCCH31.82.4e-10440466127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++C++f ++G+Ck+G++Ck++H++
  Brast05G228600.1.p 440 PGQPECQHFVKSGYCKFGAKCKYHHPR 466
                         5789*********************96 PP
5zf-CCCH253.3e-08491516227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         +++ C ++ r+G Ck+G+ C+++H++
  Brast05G228600.1.p 491 DQPVCTYYGRYGVCKFGPACTYNHPF 516
                         6899********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.02597124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.10897125IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-5100123IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-5102125IPR000571Zinc finger, CCCH-type
SMARTSM003560.0038237264IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.178237265IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-5241265IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-6241263IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-4243262IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-5285312IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.314285313IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-6288312IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-7289311IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4291310IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5439466IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.967439467IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-8441466IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-6443467IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-5445466IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-5487515IPR000571Zinc finger, CCCH-type
SMARTSM003560.0075489516IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.995489517IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-6491516IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MADTDANPAP ESDPIASIPP SSSSPPSPPA DDAAAAIETH FADLALADEL PASGWGDDDG  60
PAVLEIAGGD EVTGDKVPVP APRETAVSDS GPRFPRRPAE PDCTYYIKFG TCRFGMKCKF  120
NHPARRKKNR AKGSGSSGSS NKASSPPDDD QTPKEEYEED LVPDIAAEVD SLGFVNKGSK  180
SSNSGDLMKT SYEKGQMEPK ELKIAEETEK GTYLKKFDET DDQKVAKEKR RDTVSEGSAQ  240
EECKYYKMFG GCKFGKSCRY LHPGGKERKT EVEKVELNFL GLPLRPGGKE CQYYMRTGSC  300
KYATNCRFHH PDPTNVASRE PVLEHENGDI PQQNVQGPSQ PNVSIWPADQ RTLNEHHAPF  360
LAPAPSYSAG MIPPHGMIPP QGMYPTPEWS GYHQVPLSPY YPPGIPFHHF SGPPVNHQIY  420
RGTDVPGHQQ LPSDEYPERP GQPECQHFVK SGYCKFGAKC KYHHPRSLMP PPPPPPQAGT  480
LSPLGLPLKP DQPVCTYYGR YGVCKFGPAC TYNHPFNFGH PVPAAGPPLA GQYLTPGNYT  540
V*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G228600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014758740.10.0zinc finger CCCH domain-containing protein 65 isoform X2
SwissprotQ2QTY20.0C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBLA0A0Q3HDZ90.0A0A0Q3HDZ9_BRADI; Uncharacterized protein
STRINGBRADI4G39137.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79283548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.11e-57C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]