PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G226000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 316aa    MW: 33666.5 Da    PI: 6.7231
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G226000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.36.9e-17116166255
                 AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         g  GVr ++ +g+++AeIrd    + k +r++lg+fgt+e Aa a+++a+ + +g
  Brast05G226000.1.p 116 GLIGVRKRP-WGKFAAEIRDsT--R-KGARVWLGTFGTPEAAAMAYDQAAFSVRG 166
                         567******.**********32..2.24**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-20116175IPR016177DNA-binding domain
PROSITE profilePS5103221.035116174IPR001471AP2/ERF domain
PRINTSPR003674.0E-7117128IPR001471AP2/ERF domain
PfamPF008471.2E-12118166IPR001471AP2/ERF domain
SMARTSM003806.6E-29119180IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-26119174IPR001471AP2/ERF domain
CDDcd000182.37E-15119176No hitNo description
PRINTSPR003674.0E-7140156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MEHLLNPPAA AAMGAAYQYY DAPSSSSSAL FDMSDTDDMH LLNTLLLLAA DMDCLDMDMD  60
ASSSSSASTS TSSSASSDAG QHQQQQQAMA PTTTIAAATS PTKRRAQNQQ QPVTKGLIGV  120
RKRPWGKFAA EIRDSTRKGA RVWLGTFGTP EAAAMAYDQA AFSVRGASAV LNYPVDRVRE  180
SLRTLALGAD AAGGSPVLAL KRRHSIRKRS PNKKKATMAS SKMMPQAQSQ HTQQQQPEVK  240
TTTVAAGVVE LEDLGADYLE ELLRVSDDPL SSSSFSSMGN HHADYCYHYR YDGDDQSVIT  300
SSSSAAQAAA PAIFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-221191741772Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00286DAPTransfer from AT2G31230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G226000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014757985.11e-108ethylene-responsive transcription factor ERF037-like
TrEMBLA0A0Q3EVS81e-106A0A0Q3EVS8_BRADI; Uncharacterized protein
STRINGBRADI4G38930.11e-103(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.16e-40ethylene response factor 1