PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G213700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 419aa    MW: 47035.2 Da    PI: 6.9692
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G213700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.11e-1053137998
                         HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                  B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          +lk + + +p + ++++++   ++ t++le ++ + ++v   ++++++++vl++GW  F  +++++e+D ++F  +   +++l v +++
  Brast05G213700.1.p  53 VNLKDCTVNIPLRLVTHFKE--LTKATVQLEGPDLNIYNVVA-IKQSDDQIVLQSGWGTFLVSHHIQENDLLIFGSK--GKTRLEVIILD 137
                         46778999*******76643..35569**************9.4777778*************************43..56666777665 PP
2B333.29.6e-113314132199
                         HH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE-S CS
                  B3  21 kfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfrk 99 
                         +f++e+   + + +++tl l+   +  +W  +l+++ +     + kGW+ Fv+ n L+egD+++F+l+ ++ ++ e++v+++r+
  Brast05G213700.1.p 331 NFCTEYasAYLPDRNTTLFLRLeGKKMQWPTTLQVNHNIV-GRIHKGWQVFVSHNSLEEGDICLFELTeRKtHSLEMKVHLIRT 413
                         5666666644445566666666234478999995533332.4589*********************994446788888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-1337140IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-1538140IPR015300DNA-binding pseudobarrel domain
CDDcd100171.52E-1142137No hitNo description
SMARTSM010190.01444139IPR003340B3 DNA binding domain
PROSITE profilePS508638.78345139IPR003340B3 DNA binding domain
PfamPF023622.9E-852135IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-14276413IPR015300DNA-binding pseudobarrel domain
CDDcd100173.51E-11282412No hitNo description
SMARTSM010190.0043318414IPR003340B3 DNA binding domain
SuperFamilySSF1019368.44E-12320414IPR015300DNA-binding pseudobarrel domain
PfamPF023622.2E-8331413IPR003340B3 DNA binding domain
PROSITE profilePS508639.812358414IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MDMFTVQTPT DFAYTMLPGC HLTKAQDEKV LEIAHTMRSE IPLYVAAMNK SNVNLKDCTV  60
NIPLRLVTHF KELTKATVQL EGPDLNIYNV VAIKQSDDQI VLQSGWGTFL VSHHIQENDL  120
LIFGSKGKTR LEVIILDPSG YKKTSTCFVM GNFSTKEEMC EYSVKIVDPP PHTVIDLGSS  180
DEDDIVGEDN IKTCRLKQVP GRCAKTRKMA STSSPPVQPG YEAHKTNDQG SVELGVGSEP  240
LGSNNLKGPF QRPYMLNQRV TLTWQVKMKV EERVQAIESE LPIYVKVLTK GNVPFGDKPC  300
SLTGLCITLR NLGIIHLLSK TFTAYCTQLE NFCTEYASAY LPDRNTTLFL RLEGKKMQWP  360
TTLQVNHNIV GRIHKGWQVF VSHNSLEEGD ICLFELTERK THSLEMKVHL IRTSEIEL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G213700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A446K4M91e-115A0A446K4M9_TRITD; Uncharacterized protein
STRINGTRIUR3_26567-P11e-110(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16378713
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.16e-09B3 family protein