PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast05G209900.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 536aa MW: 55648 Da PI: 9.3267 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.4 | 1.3e-05 | 65 | 87 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H Brast05G209900.2.p 65 FVCEVCNKGFQREQNLQLHRRGH 87 89*******************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.91E-7 | 64 | 87 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.3E-6 | 64 | 87 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12171 | 3.4E-5 | 65 | 87 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 11.094 | 65 | 87 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0041 | 65 | 87 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 67 | 87 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 310 | 106 | 136 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.3E-4 | 129 | 162 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.91E-7 | 136 | 161 | No hit | No description |
SMART | SM00355 | 210 | 141 | 161 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 536 aa Download sequence Send to blast |
MAAASSAPFF GLADTQMQPA VSNSVPQPPA AAPAPKKKRN QPGNPNPDAE VIALSPRSLM 60 ATNRFVCEVC NKGFQREQNL QLHRRGHNLP WKLKQKNPKE TRRRVYLCPE PTCVHHDPAR 120 ALGDLTGIKK HYCRKHGEKK WKCDKCAKRY AVQSDWKAHS KTCGTREYRC DCGTLFSRRD 180 SFITHRAFCD ALAQESARMP PIGAGLYGGS GNMQALGLSG MAPQMQAGFV SDQAGSGGQS 240 SEVLHLGGGG NGAAQFEHIM ATSSAAGSSM FRPSAASASP FYLGGAQDYA EDDGAHHRSH 300 GGTGGCSQLL HGKPAAAFHG LMQLPDQHQG SSSSNSNNNN NSNLLNLGFF SGNGGQDARL 360 VFQNQFNNNG SNGENGLLGG VGIGGGSSFP SLFNSSSSAE APSGGLPQMS ATALLQKAAQ 420 MGATTSSHNV GGAAGSLLRG AGSRGEGGSS SSSAAAAMSE RQHHQQSFQN LIMNSLASGG 480 GVFPVVDDDG KLSTRDFLGV GAGMVQAGMS AMGPPRRQAG AAGLHIGSLD PAEMK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-34 | 137 | 199 | 3 | 65 | Zinc finger protein JACKDAW |
5b3h_F | 1e-34 | 137 | 199 | 3 | 65 | Zinc finger protein JACKDAW |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00256 | DAP | Transfer from AT2G02080 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast05G209900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK354562 | 0.0 | AK354562.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1008H21. | |||
GenBank | AK357401 | 0.0 | AK357401.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1052H09. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003578615.1 | 0.0 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_010238483.1 | 0.0 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_024319043.1 | 0.0 | protein indeterminate-domain 5, chloroplastic | ||||
TrEMBL | I1ISN8 | 0.0 | I1ISN8_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G37540.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14580.2 | 1e-108 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Brast05G209900.2.p |