PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G209900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 536aa    MW: 55648 Da    PI: 9.3267
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G209900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.3e-056587123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C+ C+k F r  nL+ H r H
  Brast05G209900.1.p 65 FVCEVCNKGFQREQNLQLHRRGH 87
                        89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.91E-76487No hitNo description
Gene3DG3DSA:3.30.160.607.3E-66487IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121713.4E-56587IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015711.0946587IPR007087Zinc finger, C2H2
SMARTSM003550.00416587IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
SMARTSM00355310106136IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-4129162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.91E-7136161No hitNo description
SMARTSM00355210141161IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MAAASSAPFF GLADTQMQPA VSNSVPQPPA AAPAPKKKRN QPGNPNPDAE VIALSPRSLM  60
ATNRFVCEVC NKGFQREQNL QLHRRGHNLP WKLKQKNPKE TRRRVYLCPE PTCVHHDPAR  120
ALGDLTGIKK HYCRKHGEKK WKCDKCAKRY AVQSDWKAHS KTCGTREYRC DCGTLFSRRD  180
SFITHRAFCD ALAQESARMP PIGAGLYGGS GNMQALGLSG MAPQMQAGFV SDQAGSGGQS  240
SEVLHLGGGG NGAAQFEHIM ATSSAAGSSM FRPSAASASP FYLGGAQDYA EDDGAHHRSH  300
GGTGGCSQLL HGKPAAAFHG LMQLPDQHQG SSSSNSNNNN NSNLLNLGFF SGNGGQDARL  360
VFQNQFNNNG SNGENGLLGG VGIGGGSSFP SLFNSSSSAE APSGGLPQMS ATALLQKAAQ  420
MGATTSSHNV GGAAGSLLRG AGSRGEGGSS SSSAAAAMSE RQHHQQSFQN LIMNSLASGG  480
GVFPVVDDDG KLSTRDFLGV GAGMVQAGMS AMGPPRRQAG AAGLHIGSLD PAEMK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-34137199365Zinc finger protein JACKDAW
5b3h_F1e-34137199365Zinc finger protein JACKDAW
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00256DAPTransfer from AT2G02080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G209900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3545620.0AK354562.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1008H21.
GenBankAK3574010.0AK357401.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1052H09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578615.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_010238483.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_024319043.10.0protein indeterminate-domain 5, chloroplastic
TrEMBLI1ISN80.0I1ISN8_BRADI; Uncharacterized protein
STRINGBRADI4G37540.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14580.21e-108C2H2-like zinc finger protein