PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G202900.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 1347aa    MW: 151943 Da    PI: 7.6851
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G202900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.32.7e-2210711131259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY    2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59  
                          dDg+ WrKYGqK+  g++++r YYrCt++   gC++ k+v+r++ +p +++++Y g+H+++
  Brast05G202900.2.p 1071 DDGFIWRKYGQKDSLGAKYSRDYYRCTHRhsrGCQAMKQVQRTDGNPLLFDVMYAGHHTCT 1131
                          7***************************99999**************************97 PP
2WRKY81.59e-2611811242159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY    1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59  
                          ldDg++WrKYGqK+v g ++pr+YYrC ++   gCp++k+v+r+++dp++++++Y+geH + 
  Brast05G202900.2.p 1181 LDDGFRWRKYGQKDVLGFKYPRAYYRCLYRqqqGCPATKQVQRTDSDPQLFDVVYHGEHICA 1242
                          59*************************9988889*************************885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd147987.13E-923146No hitNo description
SuperFamilySSF525409.72E-45179418IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3005.8E-8199296IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003644.8E-10211226No hitNo description
PfamPF009311.1E-25281444IPR002182NB-ARC
PRINTSPR003644.8E-10352366No hitNo description
SuperFamilySSF520585.1E-23483852IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.7E-16512719IPR032675Leucine-rich repeat domain, L domain-like
PROSITE profilePS514507.057658679IPR001611Leucine-rich repeat
PRINTSPR003644.8E-10708724No hitNo description
Gene3DG3DSA:3.80.10.101.7E-16757802IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:2.20.25.807.9E-2210601131IPR003657WRKY domain
PROSITE profilePS5081118.96910651128IPR003657WRKY domain
SuperFamilySSF1182901.28E-2010661131IPR003657WRKY domain
SMARTSM007744.4E-3010701132IPR003657WRKY domain
PfamPF031061.5E-2110711130IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-2511751242IPR003657WRKY domain
PROSITE profilePS5081123.13511761239IPR003657WRKY domain
SuperFamilySSF1182902.88E-2311781243IPR003657WRKY domain
SMARTSM007746.8E-3711811243IPR003657WRKY domain
PfamPF031062.0E-2411821241IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1347 aa     Download sequence    Send to blast
MACSESLWTV CALVDAMFRL PKKLDRLLVS HGHMLPRGAE DEIPLIKQDL EKMVAILQEH  60
DDSGAEDHTM MIKCLTTEVR ELSYDMEDSI DQYEHAANSR RGIPPRRNKY KVTRRRGKTT  120
ARLPEKLKWR LWMANKIREF SVRSQEALQR YSLLNHLGGN GISRAAAAST RSDASFGSWH  180
PTPYMELVGI DAPMKNLEAW LGKDGDQKLK VVSVVGSGGV GKTTLANELY RKIGGQFECW  240
AFVRMSRKPD VRRLLISMLS QVRPHQPPHT WKVHSLIANI RTHLQDKSGI LITTEIEDAA  300
LRCCGYDSKY VFTLKPLGDD DSSTLFFNTA FGPQHECPPE LNEVSNSIIR KCGGLPLATV  360
AVASLLVGWI GKLEQWEYAN KSLGYSLRTN PTSEGMKQVL NLSYNNLPQH LKACLMYITI  420
YQENYIIQKD DLVKQWIAEG LICATEDKDM EEISRSYFDE LISSRMVQPV HINDNDDVVS  480
CMVHHMIHDF VTHKSLEENF VAAIDHCQTA VTLTDKVRRL SLHFGNAEAM PSPKNMRLSQ  540
VRTLAYFGIF KCLPPIVEFG LLQVLILHLW GDDASISFDL TKISELFRLR YLHVTCNVTL  600
EVPETKMRGL QYLETLKIDA RVSAVPSDIV HLPGLLHLSL PVEVHLPDSI GHMTSLCTLA  660
YFDLSVNSIE NVQSLSELTN LQDLRLTSSR VPPWCLKSKM DSMGSILEKL SKLRSLTLEP  720
SSILNVGLSS MSICCDELSS VSSPPVLLQR FEWSPHICTF SSIPKWIGHL DKLCILKIGV  780
TQLARNDVDV LRGLPALTVL SLFVQAKPAE RIIFSKMGFS VLKYFKFKCS VPWLEFEAHA  840
MPNLRKLKLG FDAHGTDKHG TVPVGIEHLS GLKEISAKIW VAVADDPARR AAELALRHAI  900
KMHQARPTFN IQYVDGIFSG KGDNNSRLQE EEQRTLQKQY EITEEDSTSE QHGIFQKGSR  960
KDAHSRFSAF SEWKTVSDKQ ADSRTHTQRQ IEGMTTGLSS SRSWTKWLKT EAQKEEHRNL  1020
QKQYLIMEDS GEQHGVHKYS ENVKKHADNR KTLPRWKTQV KVTSQNAGVG DDGFIWRKYG  1080
QKDSLGAKYS RDYYRCTHRH SRGCQAMKQV QRTDGNPLLF DVMYAGHHTC TQGVNVQLQP  1140
GQHDQSSVSV VVNSEGSVLG LENMQSRMPK RSKHVRLVAP LDDGFRWRKY GQKDVLGFKY  1200
PRAYYRCLYR QQQGCPATKQ VQRTDSDPQL FDVVYHGEHI CAQYPATSES QLTCEEVRGS  1260
IGGFRSMTPG TSNSQVTEAG SGSGSTVGFP IMSPAMSESS TYEVVSASPA RFWSTPDEVD  1320
SMMDDTLDPD LDIFDDFEFP YPPSDQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C1e-304650034504Disease resistance RPP13-like protein 4
6j5t_F1e-304650034504Disease resistance RPP13-like protein 4
6j5t_G1e-304650034504Disease resistance RPP13-like protein 4
6j5t_L1e-304650034504Disease resistance RPP13-like protein 4
6j5t_O1e-304650034504Disease resistance RPP13-like protein 4
6j5u_A1e-304650034504Disease resistance RPP13-like protein 4
6j5v_A1e-304650034504Disease resistance RPP13-like protein 4
6j5w_A1e-304650034504Disease resistance RPP13-like protein 4
6j6i_C1e-304650034504Disease resistance RPP13-like protein 4
6j6i_F1e-304650034504Disease resistance RPP13-like protein 4
6j6i_G1e-304650034504Disease resistance RPP13-like protein 4
6j6i_L1e-304650034504Disease resistance RPP13-like protein 4
6j6i_O1e-304650034504Disease resistance RPP13-like protein 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G202900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161814.10.0putative disease resistance RPP13-like protein 2 isoform X1
TrEMBLA0A453LJ220.0A0A453LJ22_AEGTS; Uncharacterized protein
STRINGMLOC_74974.50.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.12e-28WRKY family protein