PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G188700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HSF
Protein Properties Length: 398aa    MW: 41869.3 Da    PI: 4.7476
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G188700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.71.2e-35461372102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y+++ed++++++isw+e+g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g+k+
  Brast05G188700.1.p  46 FLTKTYQLVEDPAVDDVISWNEDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRGEKR 127
                         9*****************************************************************99.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i+r+k 
  Brast05G188700.1.p 128 LLCDIHRRKV 137
                         *******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.8E-3837130IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.0E-5942135IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.16E-3543135IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.4E-3246135IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-204669IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-208496IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434085109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-2097109IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MAEHQSAAIA AAADGDGGEP PVPVPVPAAL VAPADAAGQR SLPTPFLTKT YQLVEDPAVD  60
DVISWNEDGS TFVVWRPAEF ARDLLPKYFK HNNFSSFVRQ LNTYGFRKIV PDRWEFANDC  120
FRRGEKRLLC DIHRRKVVQS SAGLAAAAAA AAAGAVTVAT AAIPMALPVT RSGSPEPHSS  180
EEQVLSSNSG SAEERLPGPS GSGSGLGVGS SSGDLGEEND RLRRDNTRLT RELGQMKKLC  240
NNIVLLMSKY AATQQPDGPA SLSSVVNCSG ESALAPPPPL PTAILDLMPS CSALATAAGL  300
AVDGEPDTSA RLFGVSIGQK RTRDSDDGGG CEEDPRDDGG EGADVKPEQA DRRPDSQERS  360
PDGPDQHSWP IYRPKPVYRA CNGPDGAGSD QDRSNSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-263613520129Heat shock factor protein 1
5d5v_B2e-263613520129Heat shock factor protein 1
5d5v_D2e-263613520129Heat shock factor protein 1
5hdg_A2e-264613510110Heat shock factor protein 1
5hdn_A2e-264613510110Heat shock factor protein 1
5hdn_B2e-264613510110Heat shock factor protein 1
5hdn_C2e-264613510110Heat shock factor protein 1
5hdn_D2e-264613510110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G188700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0986290.0FP098629.1 Phyllostachys edulis cDNA clone: bphylf056i09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578478.10.0heat stress transcription factor B-2c
SwissprotQ652B01e-146HFB2C_ORYSJ; Heat stress transcription factor B-2c
TrEMBLI1IS200.0I1IS20_BRADI; Uncharacterized protein
STRINGBRADI4G35780.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.13e-61HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Rerksiri W,Zhang X,Xiong H,Chen X
    Expression and promoter analysis of six heat stress-inducible genes in rice.
    ScientificWorldJournal, 2013. 2013: p. 397401
    [PMID:24459431]