PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Brast05G186900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 251aa MW: 26557.7 Da PI: 4.7895 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.2 | 1.6e-16 | 49 | 101 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + ++GVr++ rWv+e+r+p ++g +r +lg++ tae Aa+a++aa+++l g Brast05G186900.1.p 49 PVFRGVRRRGAACRWVCEVRVPGKRG--ARLWLGTYVTAEAAARAHDAAMLALGG 101 579******************95544..***********************9976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.7E-12 | 49 | 101 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.4E-25 | 50 | 111 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-16 | 50 | 110 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.744 | 50 | 109 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.2E-17 | 50 | 115 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 251 aa Download sequence Send to blast |
MDMGLEVSSS PSSSLSASSS PEHEAGRPPS PAPAKRPAGR TKFRETRHPV FRGVRRRGAA 60 CRWVCEVRVP GKRGARLWLG TYVTAEAAAR AHDAAMLALG GRGARLNFLD SARLLSVPPA 120 LADLADVRSA AVQAVADFQR REAAIEIAAA ATDEATSRVS ERPSSSGNAG SLETSEPAAD 180 DAKFDELPVA MDSEMFRLDL FPEMDLGMYY YTSLAEALLV DPPPPENTAG AYWDSGDCGE 240 GGADVALWSY * |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Brast05G186900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JQ180471 | 0.0 | JQ180471.1 Brachypodium distachyon CBF5 (CBF5) gene, complete cds; CBF6 pseudogene and retrotransposon, complete sequence; and CBF7 (CBF7) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003578467.1 | 1e-118 | dehydration-responsive element-binding protein 1H | ||||
Swissprot | A2Z388 | 1e-54 | DRE1H_ORYSI; Dehydration-responsive element-binding protein 1H | ||||
Swissprot | Q0J090 | 1e-54 | DRE1H_ORYSJ; Dehydration-responsive element-binding protein 1H | ||||
TrEMBL | H9C1H4 | 1e-116 | H9C1H4_BRADI; CBF5 | ||||
STRING | BRADI4G35630.1 | 1e-117 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G51990.1 | 1e-18 | C-repeat-binding factor 4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Brast05G186900.1.p |