PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast05G185600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | TCP | ||||||||
Protein Properties | Length: 305aa MW: 31426.9 Da PI: 6.0251 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 106.3 | 5e-33 | 31 | 107 | 6 | 83 |
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas 83 +r+ ++hTkv+gR+RR+R+ a+caar+ L++eLG+++d++ti WLlqq++pai ++tgt++ +a ++ +++ + Brast05G185600.1.p 31 QRNRDRHTKVEGRGRRIRMAAPCAARVARLTRELGHKSDGETIRWLLQQSEPAIVAATGTGTVPAIAT-TVDGVLRIP 107 799*********************************************************88888444.222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 24.864 | 33 | 87 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.7E-26 | 33 | 118 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MAPTDPTAAN GSIVPKPEPE FLGGLAVALP QRNRDRHTKV EGRGRRIRMA APCAARVARL 60 TRELGHKSDG ETIRWLLQQS EPAIVAATGT GTVPAIATTV DGVLRIPTES PSSAPGGDGE 120 ESGPKRRRKL QPTRAPAGPA QQLLTAPPAA YYSAATDPLL QGSGGGAISM SSGLSTVSTP 180 TGGAIPFIAI PAPGSSAAGD GKQMVPPAAV WMVPQPSGVV GSANQPTHYW AFQTNSELVN 240 FAGAQSFNVA NYQHHQACYS PMQFAVGGEP RDQQTGGQVS TGDQPQGLQD DYDGEALTDS 300 SSEE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 123 | 129 | PKRRRKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681}. | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast05G185600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003576745.1 | 0.0 | transcription factor PCF2 | ||||
Swissprot | A2YXQ1 | 7e-93 | PCF2_ORYSI; Transcription factor PCF2 | ||||
Swissprot | Q6ZBH6 | 7e-93 | PCF2_ORYSJ; Transcription factor PCF2 | ||||
TrEMBL | I1IRY8 | 0.0 | I1IRY8_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G35520.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3912 | 31 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45680.1 | 7e-39 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast05G185600.1.p |
Publications ? help Back to Top | |||
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