PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G184100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 308aa    MW: 32186.1 Da    PI: 6.7318
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G184100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.6e-12135180454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +h e+Er+RRd++N +f  Lr  +P+       +++Ka+ L  A  YI +L
  Brast05G184100.1.p 135 SHVEAERQRRDKLNRRFCDLRAAVPTV-----SRMDKASLLADAAAYIAEL 180
                         89************************6.....49**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.989131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-15133196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.84E-12134185No hitNo description
PfamPF000105.7E-10134180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-15135194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-10137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MDELLSPCSS FFAPPSPPSH EFCPAGHHHQ QVLEFASCEV PEQWLLGDIY VASSSAKNEG  60
GGDDDYGHLT TWPRAAAAGC SLSPGSDLSD LPGPHNSTIG SGCVFPAASS TPQLAGPAKR  120
RGRKPGPRPE GPTVSHVEAE RQRRDKLNRR FCDLRAAVPT VSRMDKASLL ADAAAYIAEL  180
RARVARLEDE GRQAAAARWP APDATTTGGA AVPPHFAADE AAAVEVRMVG REAAAVRVTT  240
AAAHAPARLM GALRALELQV QHACVSRVQG VTVQDVVVDV PAALRQGEDG GGALRSALLQ  300
RLHDSTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-19134193766Transcription factor MYC2
5gnj_B7e-19134193766Transcription factor MYC2
5gnj_E7e-19134193766Transcription factor MYC2
5gnj_F7e-19134193766Transcription factor MYC2
5gnj_G7e-19134193766Transcription factor MYC2
5gnj_I7e-19134193766Transcription factor MYC2
5gnj_M7e-19134193766Transcription factor MYC2
5gnj_N7e-19134193766Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G184100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0065253e-77AP006525.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0498F03.
GenBankAP0072543e-77AP007254.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, fosmid clone:OSJNOa211K08.
GenBankAP0149653e-77AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126173e-77CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576740.11e-135transcription factor MYC2
TrEMBLI1IRX41e-134I1IRX4_BRADI; Uncharacterized protein
STRINGBRADI4G35400.11e-135(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.17e-12bHLH family protein