PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G165800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 614aa    MW: 64799 Da    PI: 10.3711
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G165800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.32e-092272446
                        S-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHH CS
     Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqk 46
                        W t E++ll++av ++G+ +W+++a +++         ++t+ +c++r++ 
  Brast05G165800.1.p 22 WGTLEELLLACAVSRHGTASWDSVATEVQtriplaarPRLTPRSCRLRFHH 72
                        9999********************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00141876IPR001005SANT/Myb domain
SuperFamilySSF466898.79E-51976IPR009057Homeodomain-like
PfamPF002491.5E-82271IPR001005SANT/Myb domain
PROSITE profilePS500906.3072274IPR017877Myb-like domain
CDDcd001679.98E-52273No hitNo description
Gene3DG3DSA:1.10.10.603.9E-42274IPR009057Homeodomain-like
Gene3DG3DSA:1.20.920.106.2E-7211311IPR001487Bromodomain
SMARTSM002970.0012226338IPR001487Bromodomain
CDDcd043693.92E-8241306No hitNo description
PROSITE profilePS500149.007244306IPR001487Bromodomain
SuperFamilySSF473703.79E-9247317IPR001487Bromodomain
PfamPF004397.1E-7249316IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 614 aa     Download sequence    Send to blast
MADGSDGPDV SPDAAAPAGE IWGTLEELLL ACAVSRHGTA SWDSVATEVQ TRIPLAARPR  60
LTPRSCRLRF HHLHRRFSVA GAEEAGAEGE GEDPDASAAD GWLDELRRLR VAELRREVER  120
CDLSIGTLQT KVEQMKEERE RSLSGEAKKE GVTGEDNLSG EEPGRSCRES NSTDLKRPKH  180
SGDQSGVKEE DATAKLEEFS GESMAASKES SASQRRRRKA SAGDEESEEA SVHSQPLAAL  240
LDRVAARFGS VFERLQETQE SESYRGTIRR HVDLETMRRK LDGPAGYTSS EFYRDLLLLC  300
ANAAVYLPRH GTAEHAAAAV NALRLVSAQV SATLREPKRD LQIGKSVTAA SVNNNNNNLP  360
SAAAAADSRR AEAGGADVVG SLIEKTGKPL IFCRKRSSIA KASAAAAVAR KEEEDAAKVE  420
AEKEEGSGGE KEAAAAVATK DKAWGTRGKK TRGPNKNAGA ALGRKASKAA AATEEGATKA  480
DKRKGDADAD ADGGSSGGGL VAKKRNAVDF LKRLNQGASS STKKKRGSPL VGRKRSAAVA  540
AQEEEQPKAR RGPGKKGTGR GGSKSGAKAA GTKRSVGRPP QKRGAAPATP PPSKRAKVNR  600
SERSSSSRRG GRK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G165800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188003.10.0uncharacterized protein LOC109773708
TrEMBLI1IRA60.0I1IRA6_BRADI; Uncharacterized protein
STRINGBRADI4G33820.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31812648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.12e-23DNA-binding bromodomain-containing protein