PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G160800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 696aa    MW: 75070 Da    PI: 6.6636
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G160800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.72.8e-29286342259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +DgynWrKY qK+vk++e+prsY++Ct+++Cpvkkkvers+  ++++ei+Y+g+Hnh+
  Brast05G160800.1.p 286 EDGYNWRKYEQKQVKSTEYPRSYFKCTHPNCPVKKKVERSQ-VGQITEIIYKGTHNHP 342
                         7***************************************9.9**************7 PP
2WRKY104.84.7e-33505563159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d k v++tYeg+Hnhe
  Brast05G160800.1.p 505 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCSVRKHVERASHDLKSVITTYEGKHNHE 563
                         59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-25278344IPR003657WRKY domain
SuperFamilySSF1182909.81E-23283344IPR003657WRKY domain
SMARTSM007743.8E-32285343IPR003657WRKY domain
PROSITE profilePS5081120.897286344IPR003657WRKY domain
PfamPF031069.7E-23286342IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.1E-37490565IPR003657WRKY domain
SuperFamilySSF1182907.32E-29497565IPR003657WRKY domain
PROSITE profilePS5081137.539500565IPR003657WRKY domain
SMARTSM007744.0E-38505564IPR003657WRKY domain
PfamPF031062.8E-25506563IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MAGTSDRGSI MEDWMAMPPT PSPRTLMSSF LNEDFSSGPF SNLFSENGSN KPHDHSEKRG  60
EFVDLRDQVP AQSAEATLQK DISLEPNLSN ANQKPNPHGG LAERMASRAG FSIPKIDTSR  120
VGSSTVIRSP IAIPPGLSPT TLLESPVFLY NSMAQPSPTT GKLPFPATNA NSTIPPAAKM  180
NEDHTFSNDV FSFQPHLGSK APGFSTVEKG YNACPPNQSL SKIHQRESSL QSSFTAVKDT  240
ADETIVKPKT SDSMFGDNHS SSEEQEDDET DQNGEYSSAT ISTPDEDGYN WRKYEQKQVK  300
STEYPRSYFK CTHPNCPVKK KVERSQVGQI TEIIYKGTHN HPLPPLNRHS GVPLAHISDP  360
QVNARKNPGL QAGLNSASLW ENGRSGCVQD VQSEGVDARP ATRHLVSAYG DTSIVDSQDA  420
VDVSSTLSNE EIDRATHGTV SLDCDGGEDE TESKRRKLDA LATTTITAAA TTTTTNSTID  480
MVAAASRSVR EPRVVVQTTS EVDILDDGYR WRKYGQKVVK GNPNPRSYYK CTHPGCSVRK  540
HVERASHDLK SVITTYEGKH NHEVPAARNS GHASSGSGSA PASVPQVNLS HRRQEQAQGS  600
FGQFGGSTPF GSFGLPPRGQ LGAAGNFRFG MVPPGMSIPM PASHQQSMMQ GYPGLMMPEG  660
QPKTEPGPQS GFPEANAASS AYQQMMSRPP FGSQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-37286566878Probable WRKY transcription factor 4
2lex_A5e-37286566878Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G160800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238285.10.0probable WRKY transcription factor 2
TrEMBLI1IR530.0I1IR53_BRADI; Uncharacterized protein
TrEMBLQ2L3E10.0Q2L3E1_BRASY; Putative WRKY DNA-binding protein
STRINGBRADI4G33370.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-119WRKY DNA-binding protein 2