PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G153800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 267aa    MW: 28876.9 Da    PI: 4.4444
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G153800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.23.2e-1950103356
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         k++++++eq+++Le+ Fe ++++  e++++LA+ lgL+ rqV vWFqNrRa++k
  Brast05G153800.1.p  50 KKRRLSAEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWK 103
                         45689************************************************9 PP
2HD-ZIP_I/II133.48.1e-4349141193
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         ekkrrls+eqv++LE+sFe e+kLeperK++lar+LglqprqvavWFqnrRAR+ktkqlE+dy+aL+++ydal+ ++++L++++++L +e+
  Brast05G153800.1.p  49 EKKRRLSAEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYNALRHSYDALRLDHDALRRDKDALLAEI 139
                         69**************************************************************************************999 PP

         HD-ZIP_I/II  92 ke 93 
                         ke
  Brast05G153800.1.p 140 KE 141
                         87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.47545105IPR001356Homeobox domain
SMARTSM003891.5E-1848109IPR001356Homeobox domain
SuperFamilySSF466897.1E-2049117IPR009057Homeodomain-like
PfamPF000461.5E-1650103IPR001356Homeobox domain
CDDcd000862.69E-1850106No hitNo description
Gene3DG3DSA:1.10.10.602.2E-2051112IPR009057Homeodomain-like
PRINTSPR000318.9E-67685IPR000047Helix-turn-helix motif
PROSITE patternPS00027080103IPR017970Homeobox, conserved site
PRINTSPR000318.9E-685101IPR000047Helix-turn-helix motif
PfamPF021831.7E-17105146IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MKRPGGGSSS SLLQMANPND MDYGVVEMET EGDAEEEMMA CGGGGGGGEK KRRLSAEQVR  60
ALERSFEVEN KLEPERKARL ARDLGLQPRQ VAVWFQNRRA RWKTKQLERD YNALRHSYDA  120
LRLDHDALRR DKDALLAEIK ELKGKLGDED AAASFTSVKE EPAASDGPPP AGMGSSDSDS  180
SAVVNDTDAT GATKPAELPT PEVGTLLVAP CAAAAAAGHG EVFFHGSFLK VEEDETGFLD  240
DDEPCGGFFA DEPPLAWWTE PTEHWK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17480ERKARLA
297105RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}.
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G153800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}.
UniProtINDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3540630.0AK354063.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1004L21.
GenBankAK3558870.0AK355887.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1027I19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238252.11e-170homeobox-leucine zipper protein HOX4
SwissprotQ6K4981e-126HOX4_ORYSJ; Homeobox-leucine zipper protein HOX4
SwissprotQ9XH371e-126HOX4_ORYSI; Homeobox-leucine zipper protein HOX4
TrEMBLI1IQY01e-169I1IQY0_BRADI; Uncharacterized protein
STRINGBRADI4G32737.11e-170(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30093482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65310.25e-45homeobox protein 5
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]