PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G152900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 341aa    MW: 36179.6 Da    PI: 6.6657
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G152900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.91e-14128179155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++N+ +++Lr+l+P++   ++++ + a+i+  A++++k+L+
  Brast05G152900.1.p 128 QRMTHIAVERNRRRQMNDYLATLRSLMPPS---YAQRGDQASIVGGAINFVKELE 179
                         79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.33E-14126183No hitNo description
PROSITE profilePS5088816.094127178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-17127196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-12128179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-14128193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10133184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MALEAGVRSQ AAGLFGRCDM AGAGAGGSAS WNNPFCGACD GTVDLDGEEC AWDAAACSSS  60
LLPHGLIHEV SIPDAAAAAA DPLLQGECSG GPGKVNADGA ALVTAAASGR RKRRRPRAAK  120
NWEEVESQRM THIAVERNRR RQMNDYLATL RSLMPPSYAQ RGDQASIVGG AINFVKELEQ  180
LLQSLEAAHK RSSSRRQCTP DVNGASPPPP PFANFFTFPQ YSMSAATTSS DEGDADASGS  240
SKRSAVAEVE VTMVESHASL RVLARRRPRQ LLRLLVGLQG HRLTVLHLNV TSAGHMALYS  300
LNLKVEDDCQ LTSVDDIATA AHQIVEKIQQ EQHGCTPILE *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110114RKRRR
2128139RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G152900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576627.30.0transcription factor bHLH94
SwissprotQ9C7T43e-73BH096_ARATH; Transcription factor bHLH96
TrEMBLI1IQW90.0I1IQW9_BRADI; Uncharacterized protein
STRINGBRADI4G32650.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.14e-44bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]