PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G114800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 318aa    MW: 33729.3 Da    PI: 4.6733
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G114800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.36.2e-1989143356
                         --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         +++++t+eq+++Le+ Fe+ +r++  e++ eLA++lg+  rqV vWFqNrRa++k
  Brast05G114800.1.p  89 NKRRLTAEQVRALERSFEEeKRKLEPERKSELARRLGMAPRQVAVWFQNRRARWK 143
                         67799*************98**********************************9 PP
2HD-ZIP_I/II121.83.3e-3989179291
         HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         +krrl++eqv++LE+sFeee+ kLeperK+elar+Lg+ prqvavWFqnrRAR+ktkqlE+d++aL++a+d+l + +++L +++e+Lr ++
  Brast05G114800.1.p  89 NKRRLTAEQVRALERSFEEEKrKLEPERKSELARRLGMAPRQVAVWFQNRRARWKTKQLERDFDALRAAHDRLLAGRDALLADNESLRLQV 179
                         79****************9999*****************************************************************9776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.71E-1879147IPR009057Homeodomain-like
PROSITE profilePS5007117.79984145IPR001356Homeobox domain
SMARTSM003898.8E-1786149IPR001356Homeobox domain
CDDcd000861.80E-1787146No hitNo description
PfamPF000462.8E-1689143IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-1991152IPR009057Homeodomain-like
PRINTSPR000314.0E-6116125IPR000047Helix-turn-helix motif
PROSITE patternPS000270120143IPR017970Homeobox, conserved site
PRINTSPR000314.0E-6125141IPR000047Helix-turn-helix motif
PfamPF021837.9E-14145187IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MESGRLMFSS ATPCRAGGGQ MMLFGGSGSF LGGSPAVSGV EDGRRRKRPF LATAMDDDLQ  60
MEEYDDDTYG AYGGVDLDEH APGAGGRANK RRLTAEQVRA LERSFEEEKR KLEPERKSEL  120
ARRLGMAPRQ VAVWFQNRRA RWKTKQLERD FDALRAAHDR LLAGRDALLA DNESLRLQVI  180
SLTEELQAKA SSPVSEPEEH TTASGMVHAG ASAPPALANQ PKESCDACAV ETNAGAGAAG  240
APAIGIAGSS PESHSCFADA RSPPSSSDDD CGGAASSEGG CAFFLPDGAM LEAGAAVERE  300
SEAEAAAQLN YWAWFWN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137145RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G114800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3568501e-104AK356850.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1041A16.
GenBankCP0126171e-104CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
GenBankCT8378951e-104CT837895.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA112M06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238133.11e-162homeobox-leucine zipper protein HOX25
SwissprotA3BYC12e-74HOX25_ORYSJ; Homeobox-leucine zipper protein HOX25
TrEMBLI1IPU51e-160I1IPU5_BRADI; Uncharacterized protein
STRINGBRADI4G29380.11e-161(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127562735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-20homeobox 1