PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast05G092800.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

G2-like

Protein Properties

Length: 282aa MW: 30563.7 Da PI: 6.3157

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast05G092800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.9	2e-32	23	77	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++rlrWt eLHe+Fveav+qLGG+++AtPk +l++m+ +gLt++hvkSHLQkYRl Brast05G092800.1.p 23 RQRLRWTDELHEQFVEAVTQLGGPDRATPKGVLRIMGTPGLTIYHVKSHLQKYRL 77 58****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.814	20	80	IPR017930	Myb domain
SuperFamily	SSF46689	1.97E-17	22	77	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.3E-31	22	78	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.1E-25	24	78	IPR006447	Myb domain, plants
Pfam	PF00249	3.9E-9	25	76	IPR001005	SANT/Myb domain
Pfam	PF14379	2.7E-23	110	155	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MELGGNNMGS NDGANSKASL AARQRLRWTD ELHEQFVEAV TQLGGPDRAT PKGVLRIMGT 60 PGLTIYHVKS HLQKYRLAKY IPDSSTDGNK SDNKDPGDSL AGLDGSSGLQ ISEALKLQME 120 VQKRLHEQLE VQRQLQLRIE AQGKYLKKII EEQQRYGGIK SETLGAGGTA AVSSDQFPDS 180 ERTDPSTPAP TSESSQGVPF KRDNGGQTEA TKSPCHDEQL TTDSNCHPGS PTVSPKHERA 240 AKRQRGNGTE FLEADFSLPQ NIFESSSGPE FQQCSVPYSG H*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	6e-24	23	80	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-24	23	80	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-24	23	80	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-24	23	80	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00252	DAP	Transfer from AT2G01060	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast05G092800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK365733	0.0	AK365733.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2037A13.
GenBank	AK373855	0.0	AK373855.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3045J14.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003577958.1	0.0	myb family transcription factor PHL7
Refseq	XP_010238039.1	0.0	myb family transcription factor PHL7
Swissprot	Q9SJW0	4e-92	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	I1IP84	0.0	I1IP84_BRADI; Uncharacterized protein
STRING	BRADI4G27620.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2220	38	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	9e-69	G2-like family protein

Link Out ? help Back to Top
Phytozome	Brast05G092800.1.p