PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G080800.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 368aa    MW: 40465.6 Da    PI: 8.883
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G080800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.15.2e-122650327
                        S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                        +++C+++++tG Ck+G++CkF+H++
  Brast05G080800.2.p 26 QPECQYYLKTGMCKFGATCKFHHPR 50
                        799********************96 PP
2zf-CCCH39.68.9e-137296327
                        S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                        +++C++++rtG+Ck+G++CkF+H++
  Brast05G080800.2.p 72 EKECSYYLRTGQCKFGSTCKFNHPQ 96
                        679********************97 PP
3zf-CCCH39.97.2e-13233258227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++C+f+++tG Ck+G+ CkF+H++
  Brast05G080800.2.p 233 DQPECQFYMKTGDCKFGAVCKFHHPK 258
                         689*********************96 PP
4zf-CCCH38.22.4e-12279304227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++C f++r+G+Ck+G++CkF H++
  Brast05G080800.2.p 279 GEPICTFYSRYGICKFGPNCKFDHPM 304
                         689*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.8962351IPR000571Zinc finger, CCCH-type
SMARTSM003568.9E-62350IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-62652IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-82650IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-52951IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-56996IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-66997IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.7986997IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-107296IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-57595IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-5231258IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.511231259IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-9233258IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5235259IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4237258IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-6275303IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.821277305IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-7277304IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9279304IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-4282302IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MQQMVRIYQA VAAARMKGEY PQRIGQPECQ YYLKTGMCKF GATCKFHHPR EKAAMATQVQ  60
LNVLGYPLRP NEKECSYYLR TGQCKFGSTC KFNHPQPSNT MVALRGPVFS PGQSATSPGQ  120
HTYSGTVTNW PLSRSASFVA SPRWPGHSSY AQVIVPPGLV QVPGWSPYAA QLGSSSSDDQ  180
RQSSGAAQYY TGSRQSETQG MSDHGMISSY QHGSVPAGLY AVQRENIFPD RPDQPECQFY  240
MKTGDCKFGA VCKFHHPKER IIPTPNCVLS PLGLPLRSGE PICTFYSRYG ICKFGPNCKF  300
DHPMGTVMYG LATSPTDEVP TGRHMLAPVP AHSEVQPDNS SGRSRRMTHA DTQQTPSTER  360
STEREAS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G080800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0951930.0FP095193.1 Phyllostachys edulis cDNA clone: bphylf048f08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003577562.10.0zinc finger CCCH domain-containing protein 63
SwissprotQ2R4J40.0C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBLI1ILQ80.0I1ILQ8_BRADI; Uncharacterized protein
STRINGBRADI4G19010.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-124zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]