PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G080800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 446aa    MW: 48298.5 Da    PI: 8.3338
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G080800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.38e-115982326
                        S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                        ++ C++++rtG C++G +CkF+H+
  Brast05G080800.1.p 59 EPDCSYYMRTGLCRFGMTCKFNHP 82
                        789********************8 PP
2zf-CCCH36.86.6e-12104128327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         +++C+++++tG Ck+G++CkF+H++
  Brast05G080800.1.p 104 QPECQYYLKTGMCKFGATCKFHHPR 128
                         799********************96 PP
3zf-CCCH39.21.1e-12150174327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         +++C++++rtG+Ck+G++CkF+H++
  Brast05G080800.1.p 150 EKECSYYLRTGQCKFGSTCKFNHPQ 174
                         679********************97 PP
4zf-CCCH39.59.2e-13311336227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++C+f+++tG Ck+G+ CkF+H++
  Brast05G080800.1.p 311 DQPECQFYMKTGDCKFGAVCKFHHPK 336
                         689*********************96 PP
5zf-CCCH37.93e-12357382227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++C f++r+G+Ck+G++CkF H++
  Brast05G080800.1.p 357 GEPICTFYSRYGICKFGPNCKFDHPM 382
                         689*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.5E-45683IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.0655684IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-85982IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-56084IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-46283IPR000571Zinc finger, CCCH-type
SMARTSM003568.9E-6101128IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.896101129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6104130IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-8104128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-5107129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6147175IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5147174IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.798147175IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-10150174IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-5153173IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.511309337IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-5309336IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-9311336IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5313337IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4315336IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-6353381IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.821355383IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-7355382IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-9357382IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-4360380IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MAALSAGGPG GVVVGEGSTS SASAAAATIG PHMVDGEAMW HMSLGEAMEA GLYPERVGEP  60
DCSYYMRTGL CRFGMTCKFN HPADRKMAVA AARMKGEYPQ RIGQPECQYY LKTGMCKFGA  120
TCKFHHPREK AAMATQVQLN VLGYPLRPNE KECSYYLRTG QCKFGSTCKF NHPQPSNTMV  180
ALRGPVFSPG QSATSPGQHT YSGTVTNWPL SRSASFVASP RWPGHSSYAQ VIVPPGLVQV  240
PGWSPYAAQL GSSSSDDQRQ SSGAAQYYTG SRQSETQGMS DHGMISSYQH GSVPAGLYAV  300
QRENIFPDRP DQPECQFYMK TGDCKFGAVC KFHHPKERII PTPNCVLSPL GLPLRSGEPI  360
CTFYSRYGIC KFGPNCKFDH PMGTVMYGLA TSPTDEVPTG RHMLAPVPAH SEVQPDNSSG  420
RSRRMTHADT QQTPSTERST EREAS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G080800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0951930.0FP095193.1 Phyllostachys edulis cDNA clone: bphylf048f08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003577562.10.0zinc finger CCCH domain-containing protein 63
SwissprotQ2R4J40.0C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBLI1ILQ80.0I1ILQ8_BRADI; Uncharacterized protein
STRINGBRADI4G19010.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-155zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]