PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G028000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 366aa    MW: 40078.6 Da    PI: 9.3554
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G028000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3521.3e-16271081599
                         -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                          + +p +f+++h   +++ +  tl ++  + W v +  r ++g +++++GW eFv+an L+e  f+vF+++g++ f  +vkvf++
  Brast05G028000.1.p  27 TMPIPARFVRRHLAAEPGLRRATLVSPLKKFWHVDV-ARDGDGDVYFAGGWAEFVRANALEEENFLVFRYEGNMVF--TVKVFDT 108
                         478*********666678889***************.456666699******************************..9**9997 PP
2B344.62.6e-142863601898
                         --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                  B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                         + kkf+ ++g+++++   ++++d+ gr+W vkl  + +s++  +++GW + +  +++k+gD++vF+l++ ++f  ++++++
  Brast05G028000.1.p 286 IGKKFCMANGIVTNR--LMIIKDSLGRTWPVKL--TLTSDQARMKAGWGHIAGHHRIKVGDICVFHLVDPQTF--NISIRQ 360
                         889*******99655..7999************..99999999***********************9986666..777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.8E-2211111IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-2312111IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.97113109IPR003340B3 DNA binding domain
CDDcd100174.33E-1914107No hitNo description
SMARTSM010198.3E-1216109IPR003340B3 DNA binding domain
PfamPF023626.0E-1427108IPR003340B3 DNA binding domain
SMARTSM010190.013275362IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-15283362IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.2E-15283360IPR015300DNA-binding pseudobarrel domain
PfamPF023629.3E-12286360IPR003340B3 DNA binding domain
CDDcd100172.11E-11286359No hitNo description
PROSITE profilePS5086310.955302362IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MAAERGGRTK AGKPQFLKVL FADFVETMPI PARFVRRHLA AEPGLRRATL VSPLKKFWHV  60
DVARDGDGDV YFAGGWAEFV RANALEEENF LVFRYEGNMV FTVKVFDTSG CIKEYCGDQA  120
AVVAAAGASV EKAARNRYDV AAAAAALVEK TGPPRNRYDI DAVATASVEK MVPPRNRHDV  180
VAAASVEKTA ARNWCDGATG CGSQPASRSH GGTHAHKNRK IKETKHSSDD DNQAKKQCKS  240
DRIWTEDNGV EQHDMADKYV QADTRPEIAA VAKESEGTLP VYMKNIGKKF CMANGIVTNR  300
LMIIKDSLGR TWPVKLTLTS DQARMKAGWG HIAGHHRIKV GDICVFHLVD PQTFNISIRQ  360
AQAEA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G028000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024310373.11e-119putative B3 domain-containing protein Os04g0346900
TrEMBLA0A0Q3PIN40.0A0A0Q3PIN4_BRADI; Uncharacterized protein
STRINGTRIUR3_06365-P11e-133(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.13e-12B3 family protein