PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast05G024000.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

TCP

Protein Properties

Length: 285aa MW: 29607.1 Da PI: 10.1549

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast05G024000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	113.3	3.4e-35	62	164	2	103
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaa 91 a+k+ +++++h+kv+gR+RR+R++a caar+F+L+ eLG+ +d++t+eWLl+qa+pai+++tg++s +a+ + ++s +a+ s+++ aa Brast05G024000.1.p 62 AAKRAPSKDRHSKVEGRGRRIRMPAMCAARVFQLTGELGHRTDGETVEWLLRQAEPAIIAATGSGSLPANYAsI-AASLPAAA-SRASMAA 150 6899************************************************************7777754421.22222222.2222222 PP TCP 92 ksaa..kskksqks 103 +++ ++ ++q++ Brast05G024000.1.p 151 TFHGhgHGAPQQQQ 164 22221122222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.4E-32	68	168	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.294	68	122	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MEQRAAPPRN SSYPRHRFYY VPPAPPAPAP APAPAPAVGR QPSSSTSTAL VAAPEAEKKA 60 VAAKRAPSKD RHSKVEGRGR RIRMPAMCAA RVFQLTGELG HRTDGETVEW LLRQAEPAII 120 AATGSGSLPA NYASIAASLP AAASRASMAA TFHGHGHGAP QQQQEFMGKR YYKELGQPSS 180 LNNGDAECEK KPRMAMMPMA GPMSVWEVGA FWMQPAYGGA GSSSTANAGQ RQFMASSSGG 240 AMAGDIFNYS YYSGRSSTGG EQEGQRRPGS GAGGGEAGHG ASAQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269\|PubMed:12000681}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast05G024000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010239285.1	1e-68	transcription factor PCF3
Swissprot	Q53PH2	1e-39	PCF3_ORYSJ; Transcription factor PCF3
TrEMBL	A0A0Q3HM36	3e-67	A0A0Q3HM36_BRADI; Uncharacterized protein
STRING	BRADI4G24550.1	1e-64	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2864	32	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	4e-33	TCP family protein

Link Out ? help Back to Top
Phytozome	Brast05G024000.1.p