PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G307600.3.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 1138aa    MW: 126847 Da    PI: 6.4161
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G307600.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.93.4e-22131227199
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                         f+k+lt sd++++g +++p++ ae++  +++ ++ ++l+ +d + ++W++++i+r++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++
  Brast04G307600.3.p 131 FCKTLTASDTSTHGGFSVPRRAAEKIfpSLP-PC-QELQARDIHDNVWTFRHIFRGQPKRHLLTTGWSLFVSGKKLFAGDSVIFV--RDEK 217
                         99************************96555.45.49************************************************..5688 PP

                         E..EEEEE-S CS
                  B3  90 felvvkvfrk 99 
                         ++l+++++r+
  Brast04G307600.3.p 218 QQLLLGIRRA 227
                         889****997 PP
2Auxin_resp116.22.8e-38252335183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaa+++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m  ete+  +rr++Gt++g+sdldpvrW+nS+WrsL+
  Brast04G307600.3.p 252 AAHAAANTSPFTIFYNPRASPTEFVIPFAKYQKAMYsNQISLGMRFRMTCETEELGTRRYMGTITGISDLDPVRWKNSQWRSLQ 335
                         79*********************************989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-38120255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.9E-37123241IPR015300DNA-binding pseudobarrel domain
CDDcd100171.66E-19130217No hitNo description
PROSITE profilePS5086311.632131228IPR003340B3 DNA binding domain
PfamPF023622.9E-20131227IPR003340B3 DNA binding domain
SMARTSM010193.2E-22131228IPR003340B3 DNA binding domain
PfamPF065071.6E-33252335IPR010525Auxin response factor
PfamPF023091.9E-810021089IPR033389AUX/IAA domain
PROSITE profilePS5174527.38410041088IPR000270PB1 domain
SuperFamilySSF542772.26E-610221083No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1138 aa     Download sequence    Send to blast
MAQAPASCEA AAVPGEGERR AAAINGELWH ACAGPLVSLP PVGSLVVYFP QGHSEQVAAS  60
MQKDVEAQVP NYPNLPSKLI CLLHSVILQA DPDTDEVYAQ MTLQPVNTYA KEALQLSELA  120
LRQARPQMEF FCKTLTASDT STHGGFSVPR RAAEKIFPSL PPCQELQARD IHDNVWTFRH  180
IFRGQPKRHL LTTGWSLFVS GKKLFAGDSV IFVRDEKQQL LLGIRRANRQ PTNISSSVLS  240
SDSMHIGVLA AAAHAAANTS PFTIFYNPRA SPTEFVIPFA KYQKAMYSNQ ISLGMRFRMT  300
CETEELGTRR YMGTITGISD LDPVRWKNSQ WRSLQVGWDE SAAGERRNRV SIWEIEPLAA  360
PFFICPQPFF GVKRPRQLDD ESSEMENLWK RAMPWLGEEV CIKDAQTQSA TIPGLSLVQW  420
MNMNRQQSSS LASTSLQSEY LRSASNPAIQ NFGAADLARQ LYMQNHLLQQ SSIHLNSPNL  480
HQQVKSINDL SKETHSLDQL GAIRKQQDQN QDGASQQRQQ QSSNQVVPLS QAQTNIVQAQ  540
VILQNQMQQQ QQQQQQQQQQ SSPTQNQQGV SGQQLLQSHQ QQDQNLQLQQ QLLLQQQLKQ  600
QQQQQQEQHQ QQQQQQQQLN KLPGQLANLA SQQTKLSDQE LHLQLMQKLQ QHSLMSQSAV  660
TLSRLPLIQD QPKFLVDMQQ QLSNSDSLAR QVIPQQEERR TSLQTAKVPP LMQQEQQHRL  720
SKKQVAPADV SEAAFTPISS SSVVSKTGNT MINSRAAQSA LTEEMPSCST SPSTANGNHL  780
AQPNISRNEH CRISTEKVPH STVQMLIPTS IEAVTPIVTK ELPKLNSNVI PSVTTSKLPN  840
VVSGLQNFMH NIVPTDNLET ASSATSLWPS QTDGLLHQGF PSSNFNQHQM FKDALPDVEI  900
QGVDPSSSAL FEMNNDGPLG FPMETEGLLG NALDSVKYQN YISTDDENNY RMQKDARQEI  960
STSMVSQSFG QSDMAFNSID SAINDGALLN RNSWPPGPPP QRMRTFTKVY KRGAVGRSID  1020
IGKYSGYGEL NQALARMFGI EGQLEDRQRI GWKLVYTDHE DDVLLLGDDP WEEFVNCVRC  1080
IRILSPQEVQ QMSLDGDLGN TVLPNQACSS SDGGNAWRPR CDQNSRNPSI GPFDQFE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1572035647388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G307600.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155071.10.0auxin response factor 5-like isoform X1
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLM0YUJ90.0M0YUJ9_HORVV; Auxin response factor
STRINGMLOC_73144.40.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19