PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G303300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GATA
Protein Properties Length: 371aa    MW: 39511.5 Da    PI: 5.0129
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G303300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.46.5e-16277314136
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkglk 36 
                         C +Cg ++  Tp++R+gpdg++tLCnaCGl ++ kg++
  Brast04G303300.1.p 277 CKHCGKSStkTPMMRKGPDGPRTLCNACGLSWANKGHM 314
                         *****87777*************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132013.654140175IPR010399Tify domain
SMARTSM009796.0E-8140175IPR010399Tify domain
PfamPF062004.1E-11142174IPR010399Tify domain
PfamPF062031.4E-16202244IPR010402CCT domain
PROSITE profilePS5101712.967202244IPR010402CCT domain
SMARTSM004019.4E-13271324IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.66E-11275327No hitNo description
CDDcd002025.62E-15276320No hitNo description
Gene3DG3DSA:3.30.50.101.7E-14276318IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440277304IPR000679Zinc finger, GATA-type
PfamPF003201.0E-13277314IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MSGHHDATKP YQPRRGPERP PPPPQPAEAD ADAGAGAEAE AEAETEPLAM EQYEPHPQLY  60
EPQPLQYEPH PEHEEEEMEE GEGEEEDEEE GEGEHGHEYA YDYGAGEAVP MDADAAAHAQ  120
MQGSMLPVPA NAEAGGGGGP HAASNTLTLS FNGEVFVFES VSPDKVQAVL LLLGGRELAP  180
GLGGGPSSSA SYSKRINYHP HRMASLMRFR QKRSERNFDK KIRYSVRKEV AHRMQRHKGQ  240
FTSAKAKAED VASPVTTLDG STNWGAVEGR PPSAAICKHC GKSSTKTPMM RKGPDGPRTL  300
CNACGLSWAN KGHMRDISKC STAPLQVVPP ATSDAPNGMT EAAPIDEQQH LAIEAAPGAQ  360
PAPAANGHDS *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G303300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574659.10.0GATA transcription factor 17
SwissprotQ6Z4331e-106GAT17_ORYSJ; GATA transcription factor 17
TrEMBLI1HX690.0I1HX69_BRADI; Uncharacterized protein
STRINGBRADI3G03800.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43253868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.17e-55ZIM-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]