PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast04G296200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 193aa MW: 19712.8 Da PI: 5.2534 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.2 | 2e-18 | 20 | 70 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +gr++AeIrdps+ ++ ++lg+f++a++Aa a++aa+++l+g+ Brast04G296200.1.p 20 KYRGVRRRP-SGRYAAEIRDPSK---KTPIWLGTFDSAQDAALAYDAAARNLRGA 70 8********.7*********964...6*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.24E-20 | 20 | 77 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.7E-29 | 20 | 78 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.2E-32 | 20 | 83 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.32E-16 | 20 | 76 | No hit | No description |
Pfam | PF00847 | 1.9E-11 | 20 | 69 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.982 | 20 | 77 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-7 | 21 | 32 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-7 | 43 | 59 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MRRARPGPPA PPGLGPEEVK YRGVRRRPSG RYAAEIRDPS KKTPIWLGTF DSAQDAALAY 60 DAAARNLRGA AARTNFPSPS SAAPPVAPAA PAVVAAAATS SHSSTVETWS GGNGNTGFLV 120 PSAAIGAPPA VEEDSRSYCG SSSSALCEDG ASASASASAV PSPQLPFDLN LPDPAADDEM 180 DWRCQPDTLL RL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-21 | 13 | 86 | 7 | 81 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast04G296200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK365035 | 1e-78 | AK365035.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2030H02. | |||
GenBank | JN681193 | 1e-78 | JN681193.1 Hordeum vulgare subsp. vulgare ethylene responsive transcription factor 4 (ERF4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025801489.1 | 2e-57 | ethylene-responsive transcription factor 3-like | ||||
TrEMBL | F2DMB7 | 6e-63 | F2DMB7_HORVV; Ethylene responsive transcription factor 4 | ||||
STRING | BRADI3G04410.1 | 4e-56 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6102 | 23 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15210.1 | 4e-13 | ethylene responsive element binding factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Brast04G296200.1.p |