PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G231300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 385aa    MW: 40689.7 Da    PI: 8.5788
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G231300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.9e-12120169355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h  +Er+RR+++N+ ++ Lr+l+P     + k+ + a++   +v+YIk+Lq
  Brast04G231300.1.p 120 SSHITVERNRRKQMNENLAVLRTLMPCF---YVKRGDQASVIGGVVDYIKELQ 169
                         5899***********************9...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.999117168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.84E-12118173No hitNo description
SuperFamilySSF474592.88E-15120187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-9120169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-12120180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-9123174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd021160.00292320380No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MGEDGGLCKL FADDDCEFRH VSGDLFSILD TWEKCMNGAG EGVGGAPCSA ASLSPSSVVV  60
ADGAAEKNAV GAKPKPGSRR READEEKGGG APVRKKHKGS TVAMAAAVVE DVSDGAAKMS  120
SHITVERNRR KQMNENLAVL RTLMPCFYVK RGDQASVIGG VVDYIKELQQ ELHSLEAKKH  180
RKVYAAVHGL SPRPAGPTPL SPRQLLKPPI SPRPAVPTSP PTPTPGSPYK PIQRRLPHYI  240
SPAMTPTTSS SSTSHAASYD IISPRPYLPT LDSIVTELAA QAAARTPGLP GVGGGGAGLN  300
VLLLPEVKVE FAGPNLVLKT MSHRVRPGQV LRIIAALESL SLEILHVSIS TVDGTMVHSF  360
TIKIGIECEL SAEELVQEIR QTFL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G231300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2874823e-62AK287482.1 Oryza sativa Japonica Group cDNA, clone: J043025B18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571175.10.0transcription factor SPEECHLESS
TrEMBLI1HZB60.0I1HZB6_BRADI; Uncharacterized protein
STRINGBRADI3G09670.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34843577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.12e-36bHLH family protein