PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast04G217800.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | FAR1 | ||||||||
Protein Properties | Length: 735aa MW: 85352.9 Da PI: 8.3533 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 55.4 | 2.1e-17 | 127 | 208 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+++A +GF +r+ +++++ +k + C+++gk ++ ++ +++r+++ +C+ak+ vk++ +++we+t +++eHnH+l+p Brast04G217800.4.p 127 RFYSTHALLTGFAIRRGSNYRR------KKFHILCNRSGKLKPIQHM--QRKRKSNAMGSQCQAKVIVKLT-NEQWEITAVRSEHNHPLCP 208 5********************9......456799*********9887..88888888999***********.9****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.9E-15 | 127 | 208 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 6.3E-32 | 330 | 422 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.124 | 612 | 648 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 735 aa Download sequence Send to blast |
MLLSRVEPVG KQAMPEGRLQ PIGENYQEQA SNVGIITGLL TDKSDKQTNL VDHSPQHAEE 60 QDQSHDITEW NEMSSNDTSS GSDSDSSSGS ELDTELGKSF YPSFEALENS RPPEVGMKFP 120 TLEDAERFYS THALLTGFAI RRGSNYRRKK FHILCNRSGK LKPIQHMQRK RKSNAMGSQC 180 QAKVIVKLTN EQWEITAVRS EHNHPLCPRP SLTRFFLNHR YLSTEEKSFL RVLQQSRINP 240 KKAMKIFRRM RSNFRNVPSK EKDMSNLQCL EQWRKENSDV ETALKRFKEL ELRNLGFSYT 300 MQTDEDNIVR SLFWTDARSR VDYEIFGDFV SFDTTYSTNR HNMPFAPIVG MNNHGRTLVF 360 GCALLQDQKP ETFKWMFQTF LHVMGGKMPR AIITDQDEGM SKAISEVMPQ VKHRLCKFNV 420 MRKAREKLEV FMAARGNMNA ELHGLVDNSL TEQEFEDGWA ELVDKYDAGE NEHLRLMWET 480 RKNWAPVYFR AHFYPFIEST GHHEGANLLF KENVLPKDRI EKFIEQYERI QENIVKTDED 540 DILHSGTEPA YFSYQPIEKH AAQIYTRQIF LRIQKELFYS TAFNVHEIQG GSVYRLEKVC 600 HYENPEVDRN SFEVRVEAGT FSFKCQCAKF TRGGILCCHI FRVFTQLGIN EIPAQYILPR 660 WTLRFKEEQV KEYKDKCLKK TENTARYAML MSKMADIGKG ISVDGAKCSG FMHELDKIQE 720 RLATTGDIRR KSRK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 167 | 172 | QRKRKS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast04G217800.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014755557.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3 | ||||
TrEMBL | A0A0Q3F4K2 | 0.0 | A0A0Q3F4K2_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G10422.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27110.2 | 3e-84 | FAR1-related sequence 3 |
Link Out ? help Back to Top | |
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Phytozome | Brast04G217800.4.p |