PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G217800.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 735aa    MW: 85352.9 Da    PI: 8.3533
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G217800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR155.42.1e-17127208191
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                         +fY+++A  +GF +r+ +++++      +k +  C+++gk ++ ++   +++r+++    +C+ak+ vk++ +++we+t +++eHnH+l+p
  Brast04G217800.2.p 127 RFYSTHALLTGFAIRRGSNYRR------KKFHILCNRSGKLKPIQHM--QRKRKSNAMGSQCQAKVIVKLT-NEQWEITAVRSEHNHPLCP 208
                         5********************9......456799*********9887..88888888999***********.9****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.9E-15127208IPR004330FAR1 DNA binding domain
PfamPF105516.3E-32330422IPR018289MULE transposase domain
PROSITE profilePS509669.124612648IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    Send to blast
MLLSRVEPVG KQAMPEGRLQ PIGENYQEQA SNVGIITGLL TDKSDKQTNL VDHSPQHAEE  60
QDQSHDITEW NEMSSNDTSS GSDSDSSSGS ELDTELGKSF YPSFEALENS RPPEVGMKFP  120
TLEDAERFYS THALLTGFAI RRGSNYRRKK FHILCNRSGK LKPIQHMQRK RKSNAMGSQC  180
QAKVIVKLTN EQWEITAVRS EHNHPLCPRP SLTRFFLNHR YLSTEEKSFL RVLQQSRINP  240
KKAMKIFRRM RSNFRNVPSK EKDMSNLQCL EQWRKENSDV ETALKRFKEL ELRNLGFSYT  300
MQTDEDNIVR SLFWTDARSR VDYEIFGDFV SFDTTYSTNR HNMPFAPIVG MNNHGRTLVF  360
GCALLQDQKP ETFKWMFQTF LHVMGGKMPR AIITDQDEGM SKAISEVMPQ VKHRLCKFNV  420
MRKAREKLEV FMAARGNMNA ELHGLVDNSL TEQEFEDGWA ELVDKYDAGE NEHLRLMWET  480
RKNWAPVYFR AHFYPFIEST GHHEGANLLF KENVLPKDRI EKFIEQYERI QENIVKTDED  540
DILHSGTEPA YFSYQPIEKH AAQIYTRQIF LRIQKELFYS TAFNVHEIQG GSVYRLEKVC  600
HYENPEVDRN SFEVRVEAGT FSFKCQCAKF TRGGILCCHI FRVFTQLGIN EIPAQYILPR  660
WTLRFKEEQV KEYKDKCLKK TENTARYAML MSKMADIGKG ISVDGAKCSG FMHELDKIQE  720
RLATTGDIRR KSRK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167172QRKRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G217800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755557.10.0protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A0Q3F4K20.0A0A0Q3F4K2_BRADI; Uncharacterized protein
STRINGBRADI3G10422.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.23e-84FAR1-related sequence 3