PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G205100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 333aa    MW: 37007 Da    PI: 6.6691
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G205100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.21.9e-104089154
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                        r++ +  rEr RRd++N+ f+eL + l ++     ++++Ka+iL  +++ +k+L
  Brast04G205100.1.p 40 RKVQKADRERMRRDKLNEQFQELGTTLDPD----RPRNDKATILGDTIQMLKDL 89
                        5677889********************997....799**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.9763989IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.56E-74094No hitNo description
PfamPF000102.9E-84089IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-1340107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-1240112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-84595IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MDPRPHKPRE DGYFHQHDGS CHADPSQRAE CKAQGLVTVR KVQKADRERM RRDKLNEQFQ  60
ELGTTLDPDR PRNDKATILG DTIQMLKDLS SQVSKLKAEY SSLSEEEREL TQEKSELRDE  120
KASLKSDIDN LNTQYQQRIR MLYPWTGMEP SVVIGPPPSY PFPVPVPIPT GAVPMHPQLQ  180
AYPFFRNQTL GTVPNPCTPY MAYTQPCHPH IDQPSNQFST PVPRSSSNQS HSPAQDHRRQ  240
SCMLQRASCG RRSDDFGDVA TDLELKTPGS SAPSHSEIGN KDSSSDFKKK KQCINQINGS  300
TLTEGSSSSR CSSSGPPDVS NSVEDGSVPD DQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G205100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573201.10.0transcription factor bHLH121 isoform X2
TrEMBLI1HZY60.0I1HZY6_BRADI; Uncharacterized protein
STRINGBRADI3G11520.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117672529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.18e-56bHLH family protein