PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G191100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 263aa    MW: 28494 Da    PI: 8.3701
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G191100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.68e-15153197347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +W++ E++l++++++++G+g Wk+ ar++  +R++ q+ s++qky
  Brast04G191100.1.p 153 PWSEVEHKLFLEGIRKHGTGGWKRLAREFVVTRSAGQIASHYQKY 197
                         8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00717521967IPR001005SANT/Myb domain
SuperFamilySSF466892.37E-72267IPR009057Homeodomain-like
PROSITE profilePS500905.8662365IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.1E-42364IPR009057Homeodomain-like
PROSITE profilePS5129413.87146202IPR017930Myb domain
SuperFamilySSF466895.89E-12147203IPR009057Homeodomain-like
TIGRFAMsTIGR015574.9E-11149200IPR006447Myb domain, plants
SMARTSM007171.3E-9150200IPR001005SANT/Myb domain
PfamPF002491.2E-12153197IPR001005SANT/Myb domain
CDDcd001674.85E-9153197No hitNo description
Gene3DG3DSA:1.10.10.601.3E-9153197IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MHVVPPTPPA AAAPEPAPPP CVWTRQQDKL LGLLVCRMYP RWDLIAPPLG DKTPCQACQR  60
YESMVADLRR VLEAPQVETP REWDLHKVAV GDGAPPPGDG GEAASIDDLV RKGTGAPACS  120
VTSKDVEAVN QERIGSKNQK KKAVPQKRNK AVPWSEVEHK LFLEGIRKHG TGGWKRLARE  180
FVVTRSAGQI ASHYQKYSIR QAKRRRNECK RPSIHDINDD GTTGAAADQG SGRQPAATAE  240
GEPESGTTDD VSAGEEEAAN YR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G191100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236797.11e-132transcription factor MYBS1
TrEMBLA0A2K2D3107e-95A0A2K2D310_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144181825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.18e-21Homeodomain-like transcriptional regulator