PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Brast04G184500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | HSF | ||||||||
Protein Properties | Length: 482aa MW: 53138.9 Da PI: 5.8427 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 108.7 | 4.3e-34 | 73 | 165 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 Fl+k+y++++++ l+ +isw + gnsfvv+d+++fa++vLp+ Fkh+nf+SFvRQLn+YgF+kv+ ++ weF+h+ F +++k+ Brast04G184500.1.p 73 FLSKTYDLVSEPLLDGVISWGHAGNSFVVWDPSTFARDVLPHNFKHNNFSSFVRQLNTYGFRKVHADR---------WEFAHEGFLRNNKH 154 9****************************************************************999.........************** PP XXXXXXXXXXX CS HSF_DNA-bind 93 llekikrkkse 103 ll++i r++s+ Brast04G184500.1.p 155 LLKTIVRRRSS 165 *******9876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 3.0E-36 | 69 | 162 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 3.67E-32 | 69 | 162 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.2E-53 | 69 | 162 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.4E-16 | 73 | 96 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 3.4E-30 | 73 | 162 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.4E-16 | 111 | 123 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 112 | 136 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.4E-16 | 124 | 136 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 482 aa Download sequence Send to blast |
MDHANTNNPA TDSMDAALLL LEPKLEMEPP LHLPSPPGPG QHRLIPPPPS LAVPCEPPRP 60 LEALLQGPQL PPFLSKTYDL VSEPLLDGVI SWGHAGNSFV VWDPSTFARD VLPHNFKHNN 120 FSSFVRQLNT YGFRKVHADR WEFAHEGFLR NNKHLLKTIV RRRSSPTQQS SLQPGSSIFR 180 KAQSCSSGEE SGVNPELHTL KREKNALLQE VARLKQEHRQ TIAHMSTLNQ RLESAEDRQK 240 QVVSFLAKLL RNPAFLRQLT MLREQKEIES SRVKRKFLKH APHGSTDSDL QSFLLEDTDL 300 SDGMLPGNFG LDGVEAPGDV GALVQALNAQ DGLDFGTRAE LLGTASGSAH CQDPTIGRSK 360 GKNVLCPGLD GTTSSQADCL VSLPDNMGMI PGTVLETAGK LMDADDEQIW GVDAYLQSSC 420 SDTRQQSYGS GASDPYLMEI ANKPEKFWEL DFEELDDRDL HLDKCVIGDP ALQQQRGNMK 480 P* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 7e-24 | 65 | 165 | 11 | 123 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Brast04G184500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010235487.1 | 0.0 | heat stress transcription factor A-3 isoform X2 | ||||
Swissprot | Q6H6Q7 | 0.0 | HSFA3_ORYSJ; Heat stress transcription factor A-3 | ||||
TrEMBL | A0A0Q3FND9 | 0.0 | A0A0Q3FND9_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G44700.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9010 | 30 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G03720.1 | 1e-73 | heat shock transcription factor A3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Brast04G184500.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|