PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast04G177300.3.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Trihelix

Protein Properties

Length: 401aa MW: 46401.4 Da PI: 6.1767

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast04G177300.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	66.1	7.6e-21	82	174	1	81
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstc 79 +Wt ++v++L+ a+ +++e+++ + ++k++W+ vs m ergf +sp+qC++k+++lnkryk+++e+ +++ t++ +++ Brast04G177300.3.p 82 KWTSNMVKLLVSAVAYIDEDVEMDYgssrkkkhamlKRKGKWKLVSMSMNERGFAVSPQQCEDKFNDLNKRYKRLTEILGRGtTCQIVENP 172 7************88888885422344567888899*****************************************9668877776 PP trihelix 80 py 81 ++ Brast04G177300.3.p 173 QL 174 65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.1E-20	80	204	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MEGNLPPRTL MSGAPSDVEG SFEPHQQQFQ FAQPQLHQGM FPVPANPVQE LSNGVKTSQS 60 DEDDTLHHDR GSKAASQWHR VKWTSNMVKL LVSAVAYIDE DVEMDYGSSR KKKHAMLKRK 120 GKWKLVSMSM NERGFAVSPQ QCEDKFNDLN KRYKRLTEIL GRGTTCQIVE NPQLLEGVSL 180 SGKLKEEARK LLSSKHLHYE EMCSYHNHNR LCLLEDPVLQ KSLRLALRSR DDHEKKSSIG 240 DDDEDDQMML SDDDEEDDEF DDDTEVSAED HHHRSHGTER LQLDYDETWS ASHLSEVAAI 300 DMNKMLCERS GSLCAEKDSP GIHEIQIVKQ NLKLKAQMLK FKQRQFKWLR FSKEKDRELE 360 KMRQENEKMR LENERLELEL KLKGLEMGIK PKIVIGDWKW *

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MEGNLPPRTL MSGAPSDVEG SFEPHQQQFQ FAQPQLHQGM FPVPANPVQE LSNGVKTSQS  60
DEDDTLHHDR GSKAASQWHR VKWTSNMVKL LVSAVAYIDE DVEMDYGSSR KKKHAMLKRK  120
GKWKLVSMSM NERGFAVSPQ QCEDKFNDLN KRYKRLTEIL GRGTTCQIVE NPQLLEGVSL  180
SGKLKEEARK LLSSKHLHYE EMCSYHNHNR LCLLEDPVLQ KSLRLALRSR DDHEKKSSIG  240
DDDEDDQMML SDDDEEDDEF DDDTEVSAED HHHRSHGTER LQLDYDETWS ASHLSEVAAI  300
DMNKMLCERS GSLCAEKDSP GIHEIQIVKQ NLKLKAQMLK FKQRQFKWLR FSKEKDRELE  360
KMRQENEKMR LENERLELEL KLKGLEMGIK PKIVIGDWKW *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast04G177300.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014757160.1	0.0	uncharacterized protein LOC100828617
TrEMBL	I1IAC7	0.0	I1IAC7_BRADI; Uncharacterized protein
STRING	BRADI3G45300.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	2e-69	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Brast04G177300.3.p