PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G161000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family EIL
Protein Properties Length: 463aa    MW: 51316.7 Da    PI: 4.6099
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G161000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3360.33.5e-110603292265
                         XXXXXXXXXXXXXXXXXXXXXX..XXXXX..........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                EIN3   2 elkkrmwkdqmllkrlkerkkqlledkeaa.........tgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkp 83 
                         +lkkrmwkdqm+l++l++r     +   +           ++++ + +  + rrk+m raQDg+L++Mlk+me+cna+GfvYg i+e g+p
  Brast04G161000.1.p  60 DLKKRMWKDQMRLMKLEGRAAGARGGGVPPvpaagpsasEEQQEDSAPDVRCRRKAMLRAQDGVLRHMLKMMEACNARGFVYGVIDEAGEP 150
                         9*******************99877666556666665433334444788899*************************************** PP

                         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH-- CS
                EIN3  84 vegasdsLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWP 174
                         ++g+sdsLr+WWk++v fdr+gp+a++       +++++ss+     s+ h+l+ +qD tlgS+Lsal+qhc+ppqr+fple+g++pPWWP
  Brast04G161000.1.p 151 MSGSSDSLRGWWKDNVIFDRTGPMALAAG----GLSGDNSSSPLGLASYLHRLQGIQDNTLGSVLSALIQHCEPPQRNFPLERGLAPPWWP 237
                         **************************977....6788888888899********************************************* PP

                         -S--HHHHHHT.--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXX CS
                EIN3 175 tGkelwwgelg.lskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahs 264
                         tGke wwg++g ++++qg+ppy+kphdlkkawk+s+L+avikhmsp+++++r+l++qsk+lq+kmsa+es ++++vl qee++ ++++++ 
  Brast04G161000.1.p 238 TGKEPWWGTQGeMQAHQGAPPYRKPHDLKKAWKISLLSAVIKHMSPRFDQMRRLVWQSKRLQQKMSARESETWSKVLLQEEALNRRLKTSL 328
                         *************************************************************************************999985 PP

                         X CS
                EIN3 265 s 265
                         +
  Brast04G161000.1.p 329 Q 329
                         4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048737.3E-11360318No hitNo description
Gene3DG3DSA:1.10.3180.102.4E-63193327IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167687.85E-56196321IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MDQDVRGWMM HPFPETSSAM GHVGSAGALL DDLQEALDQQ EEQEQEEIID SEPESIEISD  60
LKKRMWKDQM RLMKLEGRAA GARGGGVPPV PAAGPSASEE QQEDSAPDVR CRRKAMLRAQ  120
DGVLRHMLKM MEACNARGFV YGVIDEAGEP MSGSSDSLRG WWKDNVIFDR TGPMALAAGG  180
LSGDNSSSPL GLASYLHRLQ GIQDNTLGSV LSALIQHCEP PQRNFPLERG LAPPWWPTGK  240
EPWWGTQGEM QAHQGAPPYR KPHDLKKAWK ISLLSAVIKH MSPRFDQMRR LVWQSKRLQQ  300
KMSARESETW SKVLLQEEAL NRRLKTSLQI TPLDEDGDEE DGDTDGLEED VVLGGAREKR  360
RCEIVPSGGG SSRGKWPRIP RGRGRSEQLA EVQAEESPID ELMELYYNCL QGDDDDGQEK  420
HDVAVVPLGV PGGLVDDAAE QFLLDIIGTC PEVDRVLRLM EE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A2e-481973244130Protein ETHYLENE INSENSITIVE 3
4zds_B2e-481973244130Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G161000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572647.20.0ETHYLENE INSENSITIVE 3-like 5 protein
SwissprotQ9FJQ52e-91EIL5_ARATH; ETHYLENE INSENSITIVE 3-like 5 protein
TrEMBLI1IAU40.0I1IAU4_BRADI; Uncharacterized protein
STRINGBRADI3G46680.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63838168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65100.13e-89EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]