PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast04G158600.2.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

NAC

Protein Properties

Length: 334aa MW: 36166.7 Da PI: 6.9059

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast04G158600.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	174.5	3e-54	13	140	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeelv++yL++k+++ +++++ e+d++k+ePwdLp++++ +ekewyfF+ +d+ky+tg+r+nrat+sgyWkatgkd+e Brast04G158600.2.p 13 LPPGFRFHPTDEELVTHYLARKTADPAGFAARAVGEADLNKCEPWDLPSRATMGEKEWYFFVVKDRKYPTGTRTNRATESGYWKATGKDRE 103 79*******************9999666689***********988899********************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +l+ +++lvg+kktLvfy+grapkg kt Wvmheyrle Brast04G158600.2.p 104 ILR-GKALVGMKKTLVFYTGRAPKGGKTGWVMHEYRLE 140 9.99******************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.53E-63	7	168	IPR003441	NAC domain
PROSITE profile	PS51005	59.927	13	168	IPR003441	NAC domain
Pfam	PF02365	3.5E-29	14	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MEHDVHQQEP MELPPGFRFH PTDEELVTHY LARKTADPAG FAARAVGEAD LNKCEPWDLP 60 SRATMGEKEW YFFVVKDRKY PTGTRTNRAT ESGYWKATGK DREILRGKAL VGMKKTLVFY 120 TGRAPKGGKT GWVMHEYRLE GKHAPAPYSL PRAATSKDEW VLCRVFKKSL EPSVAGNNGA 180 RKGACTGNMA DAVGSSMSLA DASCALPPLM DVAASSGFFA PPAAAHVTCF SNALEGHQFL 240 NPPFLLPASS AALQGAGDNM HIAMESAASP FFASMYAQEL LLDGGGGGWY SKGERERLSG 300 ASQDTGLTSE VNPTEISSSR QQHMDHEPAF WGY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-55	11	169	15	166	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-55	11	169	15	166	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-55	11	169	15	166	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-55	11	169	15	166	NO APICAL MERISTEM PROTEIN
3swm_A	9e-55	11	169	18	169	NAC domain-containing protein 19
3swm_B	9e-55	11	169	18	169	NAC domain-containing protein 19
3swm_C	9e-55	11	169	18	169	NAC domain-containing protein 19
3swm_D	9e-55	11	169	18	169	NAC domain-containing protein 19
3swp_A	9e-55	11	169	18	169	NAC domain-containing protein 19
3swp_B	9e-55	11	169	18	169	NAC domain-containing protein 19
3swp_C	9e-55	11	169	18	169	NAC domain-containing protein 19
3swp_D	9e-55	11	169	18	169	NAC domain-containing protein 19
4dul_A	8e-55	11	169	15	166	NAC domain-containing protein 19
4dul_B	8e-55	11	169	15	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast04G158600.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP095299	1e-165	FP095299.1 Phyllostachys edulis cDNA clone: bphylf045c18, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010235594.1	0.0	NAC domain-containing protein 92 isoform X2
Swissprot	Q9FLJ2	4e-84	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	I1IAW8	0.0	I1IAW8_BRADI; Uncharacterized protein
STRING	BRADI3G46900.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-85	NAC domain containing protein 100

Link Out ? help Back to Top
Phytozome	Brast04G158600.2.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]