PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G144600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family DBB
Protein Properties Length: 269aa    MW: 28873.4 Da    PI: 4.7233
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G144600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.42.1e-06446541
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                         C+ ++   ++  C  ++  lC  C +e H        H++ p
  Brast04G144600.1.p  4 QCDSCGVAAATVVCCADEAALCGRCDVEVHAAnrlaskHQRLP 46
                        7*****999*********************6577888898877 PP
2zf-B_box27.37.5e-095486234
            zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeH 34
                        + ++C+ ++ek + +fC +++ l+C+dC + +H
  Brast04G144600.1.p 54 KLPRCDVCQEKAAFIFCVEDRALFCRDCDEPIH 86
                        789***************************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.826147IPR000315B-box-type zinc finger
CDDcd000219.27E-6347No hitNo description
SMARTSM003361.1E-8447IPR000315B-box-type zinc finger
SMARTSM003369.1E-1453100IPR000315B-box-type zinc finger
PROSITE profilePS501198.87353100IPR000315B-box-type zinc finger
PfamPF006431.2E-65496IPR000315B-box-type zinc finger
CDDcd000217.21E-75686No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MKIQCDSCGV AAATVVCCAD EAALCGRCDV EVHAANRLAS KHQRLPLDAL GASKLPRCDV  60
CQEKAAFIFC VEDRALFCRD CDEPIHVPGT LSGNHQRYLA TGIRVGFGGP VSACADADHG  120
ASHDADHHAP PMAAAAERPP VQAQAQVQSQ AAAQQVPSPP QFLPQGWAVD ELLQFSDYES  180
SDKLHKESPL GFKELEWFTA DMELFQDQTP KGGRTAIEVP EFLNSQAADD AAYYRPGRGA  240
GTAVVRQSKK ARIEIPDDED FFIVPDLG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G144600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003575316.10.0B-box zinc finger protein 25
TrEMBLI1IBD60.0I1IBD6_BRADI; Uncharacterized protein
STRINGBRADI3G48180.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32023368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06040.15e-56DBB family protein