PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G142900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 813aa    MW: 92052.2 Da    PI: 8.6762
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G142900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.53.8e-1753136190
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         +fY++YA++vGF v++++s+ s ++g++   +++C k g+++ e k      r+ra++ t+C ak++vk++ d+  +v+   l+HnH+++
  Brast04G142900.1.p  53 RFYRRYARRVGFGVSVRRSSFS-QEGTCLYLELMCCKGGRPRYEPKF-----RKRASSTTNCPAKIRVKLWGDKLLHVEFAILDHNHPVS 136
                         5*****************9999.6677****************9988.....99*********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.1E-1553137IPR004330FAR1 DNA binding domain
PfamPF105519.0E-30257349IPR018289MULE transposase domain
PROSITE profilePS509669.087543579IPR007527Zinc finger, SWIM-type
SMARTSM005754.4E-6554581IPR006564Zinc finger, PMZ-type
PfamPF044345.2E-4555575IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 813 aa     Download sequence    Send to blast
MEAEEASPSR KNPRRPRRRD LNALDPNLVE SDGEDIGIPE VGMVFNNHIE VNRFYRRYAR  60
RVGFGVSVRR SSFSQEGTCL YLELMCCKGG RPRYEPKFRK RASSTTNCPA KIRVKLWGDK  120
LLHVEFAILD HNHPVSPAMA RFLNTYKQLS GPAKRRLRMG GPGAMPVEEP SKMPVDKLDA  180
LEELLFGESK HNSFVERGHL KLQPGDSEAL RLFFTRMQAK NANFFSVIDM DDEGCVRNIF  240
WADARTRAMY EYYNDAITLD TSYVVSKYDM PLVTFLGVNH HGQSVLLGCG LLSDETVETY  300
TWLFKVWVAC MSGNLPKAII TDQCRGIQSA ISEVIPGVRH RICLFQIMRK ASEILGGLSE  360
YRAISNTLQK AAYDSLTVDE FEGEWSTLIA YNGLQGHEWL SSLYECRFSW VPIFLKDTFW  420
AGMSGTQRNE TITPFFEGYV DSKTTLKQFL GKYEMILQSK YEKEAQADFE TFHKQRPPVS  480
KFYMEEQLSK IYTHNIFKKF QDEIEAIMYC HVSFVGIDEH ISTFNVKECI FLEDGKRTMS  540
KIFAVTCNTE KKDMTCICGG FQFSGILCRH SLSVLKFQQV REIPSQYVLD RWNKDFRQLH  600
VMGRPSSDVV PNNRVDRYDY LSMRCLQLVD SAVLSDKYRL ALRLVREVEK FLLNSNTHDD  660
TQPRIKSRIP KVTKPNTVTG LNLVNVANDN GNGGPNGPET SVRAPQVQKG VTENGGPPTG  720
YIGVPANVQQ FMGNQAAIRP SIVYMVPSGV DPQAFGNGVL MPVMYQQMFQ IPQQTNGAVQ  780
ETSANGKKKR PRVQKLMETS HQSNGTPGPA SG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11318RRPRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G142900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3757560.0AK375756.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3103G23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003575325.10.0protein FAR1-RELATED SEQUENCE 6
TrEMBLI1IBF20.0I1IBF2_BRADI; Uncharacterized protein
STRINGBRADI3G48330.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-132FAR1-related sequence 6