PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast04G123800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | YABBY | ||||||||
Protein Properties | Length: 258aa MW: 27366.9 Da PI: 8.0234 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 210.2 | 7.1e-65 | 21 | 215 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee.....................llee 74 s +eq+Cyv+Cn C+tilav vP +sl+k+v+vrCGhC++llsvnl+ aa + ++ ++ l Brast04G123800.1.p 21 SPTEQLCYVHCNCCDTILAVGVPCSSLYKTVAVRCGHCANLLSVNLRGLLLPPAAPPANQPQFSHSllsptsphgllddvafqtpslL-M- 109 578********************************************99955555444344444434455899999999988887642.2. PP YABBY 75 lkveeenlksnvekeesastsvssekl.........senedee.vprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsa 155 ++ +++nl+s ++++s ++ + +++e+e+ ++ +p +++PPekrqrvPsaynrfik+eiqrika+nPdi+hreafsa Brast04G123800.1.p 110 DQASGNNLSSGFAGRSNSSCASNMPAMpmpaatkpaQQQETEQtTKSAPSANKPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSA 200 23333333333333333333333333344788888744444440445566***************************************** PP YABBY 156 aaknWahfPkihfgl 170 aaknWahfP+ihfgl Brast04G123800.1.p 201 AAKNWAHFPHIHFGL 215 *************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 7.6E-70 | 22 | 215 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 4.06E-8 | 155 | 208 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.7E-4 | 162 | 207 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MSSSSSSSSA VFNLQDHLAP SPTEQLCYVH CNCCDTILAV GVPCSSLYKT VAVRCGHCAN 60 LLSVNLRGLL LPPAAPPANQ PQFSHSLLSP TSPHGLLDDV AFQTPSLLMD QASGNNLSSG 120 FAGRSNSSCA SNMPAMPMPA ATKPAQQQET EQTTKSAPSA NKPPEKRQRV PSAYNRFIKD 180 EIQRIKAGNP DITHREAFSA AAKNWAHFPH IHFGLMPDQG FKRSFVKAQD GAEDMLLKDS 240 LYAAAAAASA NMGVTPF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Seems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast04G123800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003569970.1 | 1e-163 | protein YABBY 4 | ||||
Swissprot | A2X7Q3 | 1e-118 | YAB4_ORYSI; Protein YABBY 4 | ||||
Swissprot | Q6H668 | 1e-118 | YAB4_ORYSJ; Protein YABBY 4 | ||||
TrEMBL | I1IC11 | 1e-162 | I1IC11_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G50050.1 | 1e-162 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1445 | 38 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 2e-58 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast04G123800.1.p |
Publications ? help Back to Top | |||
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