PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast04G121400.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Trihelix

Protein Properties

Length: 278aa MW: 30188.1 Da PI: 6.5177

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast04G121400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	97.3	1.3e-30	90	174	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+++e+laLi +r+em++ +r+++lk+p Weevs+k+++rg++rs+k+Ckek+en+ k+yk++ke + + +++s++++yf qlea Brast04G121400.1.p 90 RWPHNETLALIGIRSEMDSVFRNACLKAPIWEEVSRKLAQRGYRRSAKKCKEKFENVDKYYKRTKEDRAG--QPDSKSYRYFAQLEA 174 8******************************************************************9..588889*****85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12203	2.98E-29	89	154	No hit	No description
PROSITE profile	PS50090	6.307	89	147	IPR017877	Myb-like domain
Pfam	PF13837	1.3E-21	90	175	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MADNVPSPPS SPMQPPPVPV AVSASLVPSP PPSCVQMPPT VTNSEVMPAA GASTGHGVVN 60 FHDIDTSLVD VPRGGSSIGK AGAGGSGCSR WPHNETLALI GIRSEMDSVF RNACLKAPIW 120 EEVSRKLAQR GYRRSAKKCK EKFENVDKYY KRTKEDRAGQ PDSKSYRYFA QLEALHAADP 180 PQHQAAPTAM AATSARPLAM AHPGTGLLLQ DLGFWSNMES DSDDESDDDE EEGGGGISYK 240 MLMVLVKRLI KQITKRQDEM QRLLLDTLER WEAERTK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast04G121400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010235774.2	1e-127	LOW QUALITY PROTEIN: uncharacterized protein LOC100830336
TrEMBL	A0A2K2D4D9	1e-126	A0A2K2D4D9_BRADI; Uncharacterized protein
STRING	LPERR02G21190.1	2e-54	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP606	38	175

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33240.1	8e-36	GT-2-like 1

Link Out ? help Back to Top
Phytozome	Brast04G121400.1.p