PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G108200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family G2-like
Protein Properties Length: 303aa    MW: 33049.2 Da    PI: 9.3302
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G108200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.71.1e-272075255
             G2-like  2 prlrWtpeLHerFveaveqLGGse..kAtPktilelmkvkgLtlehvkSHLQkYRl 55
                        pr++Wt eLH +Fv+av+ LGG++  ++tPk+il+lm+v gLt++hvkSHLQ+YR 
  Brast04G108200.1.p 20 PRMKWTDELHGSFVRAVDFLGGQDstRTTPKRILQLMDVRGLTISHVKSHLQMYRC 75
                        8*********************974479***************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.4E-261675IPR009057Homeodomain-like
SuperFamilySSF466891.72E-142076IPR009057Homeodomain-like
TIGRFAMsTIGR015575.1E-212075IPR006447Myb domain, plants
PfamPF002491.1E-62174IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGKRRRNDGF VRQYTRSEVP RMKWTDELHG SFVRAVDFLG GQDSTRTTPK RILQLMDVRG  60
LTISHVKSHL QMYRCTPRGI GEKETLLQLH PKNHSFAVDK RGSKGFIFAP IKRAKVGTEV  120
AAAYKNMQGS SDMRRMIPGN QCCIDDYVQL QATSMDRRNV NGGLESQSAA AAVNRQHLGS  180
WVQEPDPSKV SVPEPRQHLN HTARRLSSTE SYASWCLLFS GASATTGEDE PGDSAAHKRS  240
PPRLSLAAEQ KGAEDTVSSL PSESSCVLSP SSRSFSDCSG PPGCSFAGQH VNLDLSLSIC  300
GS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-152174354Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-152174354Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-152174354Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-152174354Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G108200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014756067.10.0myb-related protein 2
TrEMBLA0A2K2D4K70.0A0A2K2D4K7_BRADI; Uncharacterized protein
STRINGBRADI3G51410.11e-125(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29663583
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14600.12e-25G2-like family protein